Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00462 ATGCCTCTCAAGACCGAACATGGAGCATCGGACAGCTCCCTCGATGAGCACTCGAAGACGGTCCCTTCTTCTAAAGTCGTCGTTCTTGCTGACCTCAACGTTGATCCTCCAGAAATGGATGAGGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCCAGGATAGTTGCAGAAGTCACTGTAATCAAGAAGCTAAAAAGTCATTATTTCAAATTTTATTGCAAACCTTATCCAAATTCCATTCAATGGAACGTCCTAAATCACTTCCTACATCTAATCCCCCGCAAAAAGGTTAAAGACGGCATTATGGCATATGACCTTAAGCCTCTTCGTGAGGTTCAGCTGTATTATTGGGAGCCTCCAAGGTTATCTATGGATGAGAGCAATCAAGACAAAACTGTGGCAATTTGCAAGGATACTAATACATTGGAAGTTGAAGGTAGACGTGTAAGCAAAATCGGAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGTAGATGGTGATCAGCATGGTCCAGGTGTCTCAACTTCACGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTCATGTACCAGAGGTTGGGCCAGCCACAAAAGGCAGTTTTAGCATATGAGAAGGCAGAGGAGATCCTACTCCAAAGTGATGTTGAGATTCACAGACCAGAGTTGCTCTCGTTGGTCCAAATTCATCATGCACAGTGTCTCCTTCTAGAAAGTGCAGGGGATAATAGTTCAAACAAAGAACTTGAACAGGAGGAGCTTGATGAGATTTTTTCTAAAATTGAGCATTCAATGCAATCTGATGTTAGACAGGCAGCTGTGTGGAATACCCTAGGCTTGTTACTTCTTACAACTGGTCGAGTGAAGAGTGCTATTTCAGTGTTGTCGTTCCTGTTGGCCATTGTTCCTAACAATTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGCGGAAATATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACAGATCAAAATCATCCTGCTGCCCTCATCAACTATGCTGCCTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCTGGTGAAGGTGGTGTTGATGAGAAGATTGTAGGCATGAATGTTGCAAAGGAATGTTTGCTAGCGACCCTAAAGGCAGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGTGTATTTTGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAATTGCATGTCTATGAGATATGCCGTTGCTATGCATCGACTTAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAACTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGATGGAGATGGCTCCACAATCGATCATTCTGTAGCATGGGCTGGGCTTTCCATGGTTCACAAGACTCAACATGAAATTGCTGTAGGATTTCGTACAGATCAGAGTGATCTGAGAGAAAAGGAAGAGCACGCCGTCTACAGTTTAAATCAGGCAATAGCTGAGGACCCAGATGATGCTGTTCAGTGGCATCAATTCGGCCTCCATAGCCTCTGTACGCGAGAATTTAAAACATCACAAAGATACCTCAAAACTGCAATTGCCCGCTTTAAGAACTGTAGCTTTGCATGGTCGAACCTAGGTATCTCGTTGCAACTCTCAGACAACCCGACACAGGCCGAAGAAGTATACAAGAAAGCTTTGTCATTGGTGGCCACAGAACAAGCACATACCATATTTTGTAACCTCGGGAATCTATATCGACAGCAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGTCTCTGGAACTGCAACCTGGTTATGCACCTGCATTTAACAATCTAGGATTAGTGTTTATTGCAGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCTGATCCGTTACTCGATTCAGCTAAGTCGAACTTGATTAAAACAGTAGGCATATCTCGACTATGTAATAGCTTATCATCGTGTCATGTTAAAGATTGA 2148 43.3 MPLKTEHGASDSSLDEHSKTVPSSKVVVLADLNVDPPEMDEDSSVHVSASTISRIVAEVTVIKKLKSHYFKFYCKPYPNSIQWNVLNHFLHLIPRKKVKDGIMAYDLKPLREVQLYYWEPPRLSMDESNQDKTVAICKDTNTLEVEGRRVSKIGKCRSRNNKVEYSLDSAADVDGDQHGPGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIHRPELLSLVQIHHAQCLLLESAGDNSSNKELEQEELDEIFSKIEHSMQSDVRQAAVWNTLGLLLLTTGRVKSAISVLSFLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILTDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKIVGMNVAKECLLATLKADPKAAHAWANLANVYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGSTIDHSVAWAGLSMVHKTQHEIAVGFRTDQSDLREKEEHAVYSLNQAIAEDPDDAVQWHQFGLHSLCTREFKTSQRYLKTAIARFKNCSFAWSNLGISLQLSDNPTQAEEVYKKALSLVATEQAHTIFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSAKSNLIKTVGISRLCNSLSSCHVKD 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3862245 3875584 + Lsi02G004620.1 Lsi02g00462 655204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00462 715 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 8 713 - -
Lsi02g00462 715 ProSiteProfiles TPR repeat region circular profile. 655 686 - -
Lsi02g00462 715 Gene3D Tetratricopeptide repeat domain 403 493 IPR011990 GO:0005515
Lsi02g00462 715 ProSiteProfiles TPR repeat region circular profile. 621 652 - -
Lsi02g00462 715 ProSiteProfiles TPR repeat profile. 621 654 IPR019734 GO:0005515
Lsi02g00462 715 SUPERFAMILY TPR-like 205 457 IPR011990 GO:0005515
Lsi02g00462 715 Gene3D Tetratricopeptide repeat domain 500 699 IPR011990 GO:0005515
Lsi02g00462 715 ProSiteProfiles TPR repeat profile. 208 241 IPR019734 GO:0005515
Lsi02g00462 715 ProSiteProfiles TPR repeat profile. 299 332 IPR019734 GO:0005515
Lsi02g00462 715 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 8 713 - -
Lsi02g00462 715 Gene3D Tetratricopeptide repeat domain 187 381 IPR011990 GO:0005515
Lsi02g00462 715 SUPERFAMILY TPR-like 532 686 IPR011990 GO:0005515
Lsi02g00462 715 Pfam Tetratricopeptide repeat 621 684 - -
Lsi02g00462 715 ProSiteProfiles TPR repeat profile. 655 688 IPR019734 GO:0005515
Lsi02g00462 715 SMART tpr_5 655 688 IPR019734 GO:0005515
Lsi02g00462 715 SMART tpr_5 299 332 IPR019734 GO:0005515
Lsi02g00462 715 SMART tpr_5 208 241 IPR019734 GO:0005515
Lsi02g00462 715 SMART tpr_5 621 654 IPR019734 GO:0005515
Lsi02g00462 715 SMART tpr_5 422 455 IPR019734 GO:0005515
Lsi02g00462 715 SMART tpr_5 585 618 IPR019734 GO:0005515
Lsi02g00462 715 SMART tpr_5 333 366 IPR019734 GO:0005515
Lsi02g00462 715 MobiDBLite consensus disorder prediction 1 22 - -
Lsi02g00462 715 Pfam Tetratricopeptide repeat 208 237 IPR019734 GO:0005515
Lsi02g00462 715 Pfam Tetratricopeptide repeat 334 365 IPR019734 GO:0005515
Lsi02g00462 715 Pfam Tetratricopeptide repeat 422 455 IPR019734 GO:0005515
Lsi02g00462 715 ProSiteProfiles TPR repeat profile. 422 455 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00462 - - - csv:101210395 1101.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00462 Lsi-Chr2:3862245 Lsi06g00759 Lsi-Chr6:14276575 1.26E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00462 Lsi_Chr02 FPKM 6.071938 7.151644 6.67886 7.607468 9.514874 9.223463 11.596138 13.172306 12.042089 14.04178