Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00464 ATGGCAACAGCCATGGCCGCGGAGCCGACGCAAGAGGTACTATCTTGGCTCAAAACCCTACCGTTGGCTCCTGAATATCACCCGACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTACCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTCAATAAGTCGCTTGCAGCTCGTGCCCCCTGTTCTGACTCGACTAATTCCAAGTCTCCGCCTACATTCACAACTCGACAACAGCAGATCGGGTTTTGCCCGCGGAAAACACGACCGGTTCAGAAATCAGTGTGGCAGAGCGGTGAGTACTATACATTTCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGCTATTTGAAGAAATGTGCGAAGAAAGGAGGGCTTTCGCCTTTGGAAATCGAGACACTCTATTGGAGGGCCACTTTGGACAAGCCCTTTTCGGTGGAATATGCGAATGATATGCCTGGCTCAGCTTTTGTGCCGGTAAGTGCAAAAATGTTTAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTATTGCGATTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTGTATGTTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTAGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACTTGGTATGGCGTACCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCCCTTGTAACTTTTGCTGTTCTTGGTGAGAAGACCACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGTGAGGTCTCTACCATAGTTCATGATGCACATGTGATTGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCCATCAATTATCCTCCAATGGTTTCTCATTATCAGTTGCTATATGATCTTGCATTAAGTTCCAGAGCACCTATGTGCAATGGTGCTGAACCAAGAAGTTCACGACTAAAAGATAAAAGGAGGAGTGAAGGGGAAACGGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACAGCCTGCTGGACATTCTTGGAAGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCGATTTATTCGAGACTGCGTGTTGGATCCCACTTGAGAGCAAAACCTAGATTTCCTGCTGGTGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTCGCACTAGAAAATAGTCCGGGAATTAGTCGAGCGAAAGGTTTCTATTCAGCTAACGGGCTATATTCTACTCTATCTGAAAGAAGCACGGACAATTTATGTGCTTCAAGTTCAAGGTCTTTGAATGCCAACAATGAACGGGGAGGTGGTAATGTTCAAAGTGATGGATTATCAGATCAAAGACTGTTTTCTTGTGTCACATGTGGTATTTTAAGCTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTCGTTGGTTCTGGGATAGCCAGTGAAGGGATTGCTACTAGAGATGGGCATGCAGTTAGCTCTCAGCAGATTAGTAACAGTGGAAAAAGAGATAAGTGTGTCTCTGATGGTTTGTACGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTACAGTAGTAGATGAAAGTTACGAAGCTAATTTAAATACTGAAAAACGGAATGAGACTTCTGCCCTTGGCATGCTTGCATTGACTTATGGACATTCTTCTGATTCTGAGGAGGACAATGCTGAAGCAGATGCTGCTTTAAATGTGGATGATGCTAAACTAATGATTTGTTCTTCAGAAGACCAATATCAGTTTGAGAATTCTGGCCTTACTTCTAGTGAATATTGCAAGAATACTGCAACTTTGAATCACGATCCCTCGTCATTTGGTGTTAACGCTGCAGATCAAATGCAATTTCAAGTCAATGACTATGAAGAATTTGGACGAGCTAGATCTGATTCCAAGGACTCGTTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACAAAGAAAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAATGGCAGATCTTCCTTAGATGCTGATACTGAAAAACCAGTGTTTGACAAGTCCGCTGAACCAGTGGAGATTGAGAATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCGAGATTGCATGTATTTTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGTGCACATTGTTTTACTTTGTCATCCAGGATTAGACAGATTGAACTTTGAACTGTTCCATCTTCCCCACAAAATAATAATAACTATTATTATAATTGTAAAAATAAAATTTAACGATAATAAAAATAAAATTTTCCCTGAAAACATCTTCGGCTTATCACTGATTTGTGATTTTGTTGGTGTTTCAAACCATTTAAGTGGTTTAGTAAGTTTTCTTAGAACAACAATTTCAATCTCCTTAGTTACATTTGGAGGCCTCTTGAGAAGGGTAACTTCTTTTGCTGCTGTATTTAAGATATATTTTTGGGTTTTGTGGTTGGGGACGAACATGGAAGATCTTTTAAATGGGGTCAAAGACCTTTGGTTAGTTGGGACTGGTGTTAAGTTCTGTACTTACATGGAGCACAATGTCAAACCACTAATTAATGTCAGTTTGATTAGTGTTATGTGGAGGCTTCTATGTAAAGATCTTGGTGACTTCTATGTTAGTTTTTCTTGTTATATGGAGCACAAGAATTCCTCCAAGCCTTCTAACTTTCTTTTGGTGTTTTCCGACGTTGATGAGTCACCAAACTATCCGAAGATGGAGGCAGAAGCACAACTGGTGGCACAAGAATTAAATATGAACCATCTGTGGACTGATACGATGTTCAGAGGTGCCACCCAAGATGAAGAAAAGAGGATTCAGTTGGCTTTAGATAGCGAGGAAGCAATTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAATCTCTTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCTAACTCTTCTGGTAAGCCAAAAGTCTATCAAAGGAGGACTGGCAAGTTGAAAAGAGTAGTTGCAGGGAAATGGTGTGGGAAAGTCTGGATGTCAAATCAAGTTCATCCTTTGCTAGCAAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTCCCTTCTTGGACAATGTCAGATGAGAAGGTTGATAGGAAACCAGAAAATATCCAGAAAAATGAGACTGTTATGGTAAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGTGGAACAACTAAGAAAGCGAAACCTATAGAGTCAGAGGACATGGTTTCAGATGCTTCGATTGAAGATTGTATCCATCAGCATCATAGTATTCTACGGAACAAGCAATCCAAATTTGTTGAGAGCAATGATGCTATCTCGGATGATTCTGTGGAGGATGATTCTTGTAGAAAACATGGAGTTCCCATCAGCAAGGGAGTGACATATTGTGGGACAGATGATACCGGTTCAGATGATTCTCTTGGAGATCGTCATAATCTGCACAGAGGCTTCTCCGGATTCAAGCTGCCTAAGTGGGGTGAGATAGAACCTGCAGTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAAGACAGAAAAATACATTGAGAGACAAGATGCACTTTCAGATGAGTGTCTGGAGAGTGGTTCTCTTAAGCAATATAGAAGAATTCCGAGAAGCAAGCAAATCAAAGTTCTTAAAAAGAATGTCATTTCGCATGCTATACGGGACGATAGTTTTCTTTGGCATCATCAAAGGCCTTCCAGAAGCAAGAAGGCCAAATCTATCGAGAGTGAAAATGCAGTTTCAGAGGACTCCCTAGAAAATAATTCTCATCAGCATAGAAGTATGCCTCAAATAAAACCAGCCAAATGCACTGTGAGGGAAGATGCATTTTCAGATGGTCCAGATGAAGATGATAATTCTCTTCTGCAGCATCGGAATATTAGAAGAAACGCGCAATTCAAATACAGTGAGAGAGAAATTACATCAGATGACCAGCTTGATGATAGTGCTAATCAATGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTCAAGACAGAGACAATTTCACAAATGAAACAAGAGATCCTGCGACCTGCAAGGCGAGGAGCTCAGACTTTGAAAGAAGAATTTGCTCAGTCTTTAAAACGTGGAGGCCGCCATACGTTAAAGTTAGAGACCCCTCAGCCAAAAATACAGCATGCCCCCAATCAACGAGGTAAGCAAACTAAGAGGAACAGTAAATTGACTGATTTAGAGTCAGAGGAAGAGCAACCAGGTGGACCTAGTACACGTCTTAGAAAAAGAACTCCAAAGCCTACAAAACTTCCAGAAGCGAAGCCAAAAGATAAAAAACCAATTGGCAAGAAAAAGGTGAAGAATGGTTCATCTTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGATGAGGAATCAGAGTATCTTTGTGACATTGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGCCTTGCACAAACGAAATATTTGTCCTGTCAAGGGGTGTGGGAAGAAGTTTTTCTCACACAAGTACCTTGTGCAGCATCGTCGAGTCCACATGGACGATCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACGGGTGCCCGACCTTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTTGTTTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGGTAGAGGTTAA 5262 41.9 MATAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAPCSDSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCAKKGGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKMFREAGEGTTLGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGEVSTIVHDAHVIGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPMCNGAEPRSSRLKDKRRSEGETVIKELFVQNIVENNSLLDILGRGASVVLLPPGSLESIYSRLRVGSHLRAKPRFPAGVCSSKEETKSPQSFDYDNLALENSPGISRAKGFYSANGLYSTLSERSTDNLCASSSRSLNANNERGGGNVQSDGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGIASEGIATRDGHAVSSQQISNSGKRDKCVSDGLYDVPVQAVNRQLTVVDESYEANLNTEKRNETSALGMLALTYGHSSDSEEDNAEADAALNVDDAKLMICSSEDQYQFENSGLTSSEYCKNTATLNHDPSSFGVNAADQMQFQVNDYEEFGRARSDSKDSFNCSSESEMDGIGSTKKNGLSTRYQDSHVNGRSSLDADTEKPVFDKSAEPVEIENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVHIVLLCHPGLDRLNFELFHLPHKIIITIIIIVKIKFNDNKNKIFPENIFGLSLICDFVGVSNHLSGLVSFLRTTISISLVTFGGLLRRVTSFAAVFKIYFWVLWLGTNMEDLLNGVKDLWLVGTGVKFCTYMEHNVKPLINVSLISVMWRLLCKDLGDFYVSFSCYMEHKNSSKPSNFLLVFSDVDESPNYPKMEAEAQLVAQELNMNHLWTDTMFRGATQDEEKRIQLALDSEEAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDIFPSWTMSDEKVDRKPENIQKNETVMVNRKSAGKRKMTYGSGTTKKAKPIESEDMVSDASIEDCIHQHHSILRNKQSKFVESNDAISDDSVEDDSCRKHGVPISKGVTYCGTDDTGSDDSLGDRHNLHRGFSGFKLPKWGEIEPAVSDDSLEHYSSQHRGKNIKSKTEKYIERQDALSDECLESGSLKQYRRIPRSKQIKVLKKNVISHAIRDDSFLWHHQRPSRSKKAKSIESENAVSEDSLENNSHQHRSMPQIKPAKCTVREDAFSDGPDEDDNSLLQHRNIRRNAQFKYSEREITSDDQLDDSANQCRRRVLRSKPVKTETISQMKQEILRPARRGAQTLKEEFAQSLKRGGRHTLKLETPQPKIQHAPNQRGKQTKRNSKLTDLESEEEQPGGPSTRLRKRTPKPTKLPEAKPKDKKPIGKKKVKNGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELALHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3888416 3896591 + Lsi02G004640.1 Lsi02g00464 655206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 1565 1584 - -
Lsi02g00464 1753 ProSitePatterns Zinc finger C2H2 type domain signature. 1722 1746 IPR013087 -
Lsi02g00464 1753 SUPERFAMILY Clavaminate synthase-like 208 375 - -
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 1592 1606 - -
Lsi02g00464 1753 Pfam jmjN domain 24 57 IPR003349 -
Lsi02g00464 1753 SUPERFAMILY beta-beta-alpha zinc fingers 1708 1742 IPR036236 -
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 1402 1421 - -
Lsi02g00464 1753 Gene3D Cupin 16 380 - -
Lsi02g00464 1753 ProSiteProfiles Zinc finger C2H2 type domain profile. 1690 1719 IPR013087 -
Lsi02g00464 1753 SUPERFAMILY beta-beta-alpha zinc fingers 1676 1718 IPR036236 -
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 766 785 - -
Lsi02g00464 1753 ProSitePatterns Zinc finger C2H2 type domain signature. 1662 1684 IPR013087 -
Lsi02g00464 1753 ProSitePatterns Zinc finger C2H2 type domain signature. 1692 1714 IPR013087 -
Lsi02g00464 1753 ProSiteProfiles Zinc finger C2H2 type domain profile. 1720 1751 IPR013087 -
Lsi02g00464 1753 SMART JmjN_1 22 63 IPR003349 -
Lsi02g00464 1753 SMART cupin_9 194 376 IPR003347 -
Lsi02g00464 1753 ProSiteProfiles JmjC domain profile. 197 376 IPR003347 -
Lsi02g00464 1753 ProSiteProfiles Zinc finger C2H2 type domain profile. 1660 1689 IPR013087 -
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 1402 1444 - -
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 1535 1632 - -
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 1422 1437 - -
Lsi02g00464 1753 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1 866 - -
Lsi02g00464 1753 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1041 1743 - -
Lsi02g00464 1753 SMART c2h2final6 1690 1714 IPR013087 -
Lsi02g00464 1753 SMART c2h2final6 1720 1746 IPR013087 -
Lsi02g00464 1753 SMART c2h2final6 1660 1684 IPR013087 -
Lsi02g00464 1753 SMART c2h2final6 1637 1659 IPR013087 -
Lsi02g00464 1753 Pfam JmjC domain, hydroxylase 227 337 IPR003347 -
Lsi02g00464 1753 Gene3D Classic Zinc Finger 1659 1744 - -
Lsi02g00464 1753 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 866 - -
Lsi02g00464 1753 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1041 1743 - -
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 757 785 - -
Lsi02g00464 1753 ProSiteProfiles JmjN domain profile. 23 64 IPR003349 -
Lsi02g00464 1753 MobiDBLite consensus disorder prediction 1215 1236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00464 - - - csv:101210063 1578.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00464 Lsi-Chr2:3888416 Lsi08g00712 Lsi-Chr8:15451595 7.35E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24759 PF02373 JmjC 7.50E-33 CL0029 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00464 Lsi_Chr02 FPKM 11.36908 12.890133 10.880637 10.09996 24.428356 21.389305 25.834723 9.273603 9.616003 9.362873