Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00466 ATGAGCCATTTGCAGTTTTACTTGAGGACAGGGGGTTGTAAATATGGAAACGCCTGTAGATATAACCACACGAGACCAAGAGCGTTAACAAGCCCAATTCTAGAGCTTAACTTCCTTGGTCTGCCAATCCGACCAGATGAAAAAGAATGTCCCTATTACATGCGCACAGGGTCCTGCAAATATGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAACTGTTGCTGTATCTGAATCTCTTTCAGGATATAACAATGGCGTGCCCCTACAAGGTGCATCACAATCACAGATCACATCCTGGACTTCACCAAGAGTACTTAATGAAGCCACAACATTTGTACCTGCTATGATTTCACCATCTCAAGATTCAGAATGGAATGGGTACCAGTACAAATACTTCTTTGAGTACCAAAAGAAGTTGAAATTCCTAATAATAATTCGATTTACTTTCTGGTACTCCTTGGCTGACTTCCTTCTTGGTATGTTCAATGTTAAGGCTCCCATATATCCATCAGAAATCAGCGTGCTTCCACCTCCAACATACGTCGTGAACAATATAGCATCGGGGACGGATCTCTATTCTTCTCATCAGCAGGTGGACAAATATCCTGAACGACCTGGTCAACCCGAATGCACTTACTTTCTAAAGACGGGAGATTGTAAATTTAAATCTCTTTGCAAATATCACCATCCGAAGAATTGGAACCCTAAGTTACCGACTTGCACTCTCAATGATAAAGGCCTGCCTTTGAGACCTGATCAGAACGTATGCACGTATTATAGTCGCTATGGCATCTGCAAGTTCGGGCCATCCTGCAAGTTCGACCATCCTATTCTTCCAACTTCTTCAACTGTGAGCGAGCTTGAACAGCAACCTCACTATGGCAACTTTAGCGCTGCAGAAGGGGCTGAAATGGCCGGAGGAGGGAGCGGAAACAGTGCTACAGTTGAGCAGTCTGCATAA 966 43.79 MSHLQFYLRTGGCKYGNACRYNHTRPRALTSPILELNFLGLPIRPDEKECPYYMRTGSCKYGANCKFNHPDPTTVAVSESLSGYNNGVPLQGASQSQITSWTSPRVLNEATTFVPAMISPSQDSEWNGYQYKYFFEYQKKLKFLIIIRFTFWYSLADFLLGMFNVKAPIYPSEISVLPPPTYVVNNIASGTDLYSSHQQVDKYPERPGQPECTYFLKTGDCKFKSLCKYHHPKNWNPKLPTCTLNDKGLPLRPDQNVCTYYSRYGICKFGPSCKFDHPILPTSSTVSELEQQPHYGNFSAAEGAEMAGGGSGNSATVEQSA 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3900167 3902739 + Lsi02G004660.1 Lsi02g00466 655208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00466 321 SMART c3hfinal6 252 279 IPR000571 GO:0046872
Lsi02g00466 321 SMART c3hfinal6 2 25 IPR000571 GO:0046872
Lsi02g00466 321 SMART c3hfinal6 46 71 IPR000571 GO:0046872
Lsi02g00466 321 SMART c3hfinal6 206 233 IPR000571 GO:0046872
Lsi02g00466 321 ProSiteProfiles Zinc finger C3H1-type profile. 252 280 IPR000571 GO:0046872
Lsi02g00466 321 Gene3D - 165 238 - -
Lsi02g00466 321 SUPERFAMILY CCCH zinc finger 250 278 IPR036855 GO:0046872
Lsi02g00466 321 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Lsi02g00466 321 MobiDBLite consensus disorder prediction 301 321 - -
Lsi02g00466 321 ProSiteProfiles Zinc finger C3H1-type profile. 1 26 IPR000571 GO:0046872
Lsi02g00466 321 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 166 320 - -
Lsi02g00466 321 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 3 135 - -
Lsi02g00466 321 Gene3D - 5 82 - -
Lsi02g00466 321 Gene3D - 250 304 - -
Lsi02g00466 321 SUPERFAMILY CCCH zinc finger 44 72 IPR036855 GO:0046872
Lsi02g00466 321 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 5 23 IPR000571 GO:0046872
Lsi02g00466 321 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 278 IPR000571 GO:0046872
Lsi02g00466 321 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 233 IPR000571 GO:0046872
Lsi02g00466 321 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 70 IPR000571 GO:0046872
Lsi02g00466 321 ProSiteProfiles Zinc finger C3H1-type profile. 206 234 IPR000571 GO:0046872
Lsi02g00466 321 PANTHER PROTEIN PHOSPHATASE RELATED 166 320 - -
Lsi02g00466 321 PANTHER PROTEIN PHOSPHATASE RELATED 3 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00466 - - - cmo:103484086 541.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00466 Lsi-Chr2:3900167 Lsi10g01567 Lsi-Chr10:20091428 8.20E-08 dispersed
Lsi02g00465 Lsi-Chr2:3897490 Lsi02g00466 Lsi-Chr2:3900167 7.10E-06 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24761 PF00642 zf-CCCH 3.50E-09 CL0537 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00466 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0