Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00469 ATGTTGGATTGTTATCAGAGGCTTTCTTCTGGCCATTCTTACAAAGATTTCCTTGAGTTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTTGCAGCTTCATTTCCAAGAGGCAAGGATGGTTCATCCTTCCAGATGAAATTAGTAGACTCAGATGGAAGGCCATATATCTCATCCTACGGAAGGAAAGCAACTATAAGCGAATTCTACTCTGTTATATTGCCATCCCTACAACGGCTTTGTGATTATGCATCACAGGTAGATAGCATTGAAGATCTCCACAAGGGAATGACGATCTCAAAGAGATTAGAACACAAGAGGGAACTTTTAGATTTGGACATAGAAAGAGAAGACGAATGTGGGATCTGTTTGGAGTCACGTACCAAAATTGTCTTGCCACATTGTTGTCATGCCATGTGCACAAATTGCTACCATGATTGGAAATCAAAGTCAGAATCTTGCCCGTTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGCAGTAACGACGTGGTCGACACTCGTACTATCATGAAAGAAGATATGTTACGCTTCTATCTTTTTATAAACAATCTACCTGATGATACACCTGATGTTCTATTCCTAATGTATTATGAACATTTGTTGTAA 651 40.55 MLDCYQRLSSGHSYKDFLEFLEADIRHANAFAASFPRGKDGSSFQMKLVDSDGRPYISSYGRKATISEFYSVILPSLQRLCDYASQVDSIEDLHKGMTISKRLEHKRELLDLDIEREDECGICLESRTKIVLPHCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTRTIMKEDMLRFYLFINNLPDDTPDVLFLMYYEHLL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3912797 3915745 - Lsi02G004690.1 Lsi02g00469 655211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00469 216 ProSiteProfiles Zinc finger RING-type profile. 120 158 IPR001841 -
Lsi02g00469 216 SMART ring_2 120 157 IPR001841 -
Lsi02g00469 216 PANTHER RING FINGER PROTEIN 41, 151 49 216 - -
Lsi02g00469 216 PANTHER RING FINGER PROTEIN 41, 151 10 49 - -
Lsi02g00469 216 SUPERFAMILY RING/U-box 109 163 - -
Lsi02g00469 216 ProSitePatterns Zinc finger RING-type signature. 135 144 IPR017907 -
Lsi02g00469 216 Pfam Zinc finger, C3HC4 type (RING finger) 117 163 - -
Lsi02g00469 216 PANTHER OS01G0905700 PROTEIN 49 216 - -
Lsi02g00469 216 PANTHER OS01G0905700 PROTEIN 10 49 - -
Lsi02g00469 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 167 IPR013083 -
Lsi02g00469 216 SUPERFAMILY FdhE-like 6 160 IPR024064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00469 - - - csv:101210315 390.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00469 Lsi-Chr2:3912797 Lsi03g02208 Lsi-Chr3:33094073 6.29E-46 dispersed
Lsi02g00469 Lsi-Chr2:3912797 Lsi08g01622 Lsi-Chr8:24161059 2.00E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g900 . . . . . Bpe13g00215 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0047 . . Lsi02g00469 Csa01g00926 Chy12g01201 . . . Bda11g01623 . . . . . . . . . . . . . . . . . . . . . Cla03g00325 Cam03g0342 Cec03g0334 Cco03g0347 Clacu03g0344 Cmu03g0949 Cre03g0642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00469 Lsi_Chr02 FPKM 1.120773 0.805069 1.315476 1.492228 0.965908 0.0 2.296387 1.245492 0.0 1.223103