Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00472 ATGGGCCGGTCGAATGGAGCCCATCAATTGGGGCAACTGCCAAGTTCTCTTGTTAATTTCCTTCGAGAAACAGAGTTTCGCACCAAAATTGCAGAAGTTGAAGCTTTAACCATGGAGGATAGCGGAAAGAGGAGGGAGCTTGAGGCAAAGGTCCTGGAGAGGGTGGCGGAGGTTATCTCGGTGATAAAGAATGCGAAGCACGTCGACCAAGTCATATCTGCCCTTCATTCCCTAGCTGTTCTTCTCTTCCCTGTAGATGCGTCTATAATCGCCGAGTGTGTTGGTCAGAGCTACAGGGACCAGATCCTCAGTTCGTGGCTTCCATCCAAAAGTGAGAGGCTGGAGTGTTGGAATGCATTCTATAATGGAGCTGCATTCTCAGCATTGTCCCGGGTTTTATTACTTGAGCTTGCATCCAGTTGGTTGGCATGTTTCCCTTTTTTGGCAAAGAAGCACTTGTATGACATTTTCTTTGTTGATGGAGCTGCCATTGAGGTCGTTCAGAACCTTGTTCCTTCTCTGCAGCCGAATGCAAGTGATGGAGTTGATGTTAAAGCTGTACGCTCAAATACTGAAAGATTGATTGTACTTTGCTTGCTTGAGAAGGATGGGGTGCTTCAGATGGCAAAAGAATTTGGGGAATCCTGCAAATATGAGAATTATGTAACTGAACGCACCATACCAGCCACTTCTAAGATTACCAATCAATTCCTTTCTCTAGCAGAAGCAAAAGCTTTTAGTAATATTGAACTTGATGGCACCATGATGTTTGTGGGGGAGACATTTTCTCGCATTTGCCGACGTGGATCTGCAGACTTGTTACTAAATGAATTAATTCCTCGTATCATGAAGCACGTCCATGATGTTGTAATGTCAAATATTCATTCAGCTATCACTGGCGTATTTGAATCAAACCCCAATTCCCAGTTCTGGTTGAAGATAATGGAAACAATTAAAGATAATTATGCCGTTGAAAGAATTTCTGAGCAGCTTTTACATCAGCTAGCTGCTACATGTGAGAGTGATATTGATGCTTACTGGGTGCTTTGGCTACTTTTTCATCGTAGTCTAAGAGTACGTATGTCAGTAAGGTCCATTTTTGTTGACAAATTTTTGGTCTGGAAGGTATTCCCCATTCATTGCCTGCGCTGGGTTCTACAGTTTGCTATTCTCGAATGCCCACCTGATGCCAATTGTCTCAAGAAAGGTCATAATAATAGCAGCCTCTTAATGACAATGCAGCGTCTGGTAGAAGTGTGGTCTAAAAAGGAGTTTGTCCAATCAGCCACGATTGAGCAGCAAGCTTATATATCTGCGGCGGTTGGTCTTTCTCTTGAATTAATGTCTAAAGAGGAACTTGATGAAACTAAGACCGTTATGCACTCAATTCTTCAAGGGGTTAGCTGTAGGCTGGAGAATCCTAATCAATGGGTTCGGAAAATGGCTAGCAATGTTGCTCTAGTGTTCTCTAAAGTTATTGACCCTAAGAATCCTCTGTATCTTGATGATAGTTGCATGGGAGACACCATAGATTGGGAGTTTGGGTCAGCTACTCATAGAAAAGGGACTATAGATTGTACAATTGATGCACAGACTGGATCTAAAGAAACAAAAGCCTCTACTACTTTGGTTCAGAAAAAGGAAGCTACTCGTGCTGCCAGAGTGGGGACTGGGCATAACATACGAAGTAAAAATAAGAAAAGTTGGGAGTTTAAGTTGGCTGATCCAGATGAGGTTGTTGATCCAGCTAGCTTAAATTGTGGATCCATTTCTGAGGATGATAATGACGATAATGAAAGTGATACATCTGATTCCACCAGTGACTCATCATTACAGCCATATGATATGTCAGACGATGACACAGATCTTAAAAAAAAATTATCACAGTTGGTCGATGTAGTTGGTTCACTCCGTAAATCTGATGATGTTGAAGGGGTAGAGAGAGCTCTTGATGTTTCTGAAAAGCTCATCCGAGCATCACCTGATGAACTTAGACATGTAGCATCAGATCTTGTAAGAACTCTTGTTCAAGTCCGATGCTCTGACATAGCTATTGAAGGAGAGGAAGATTCAACTGAAGACAAGAGGCAAAGAGCGTTGGTTGCATTGGTTGTTATGTGCCCAGTTGAATCTCTTAATATTCTCAATAAATTACTATATTCACCTAATGTGGATACCAGTCAGCGCATAATGATACTTGACAGCATGACGGAGGCAGCTCAGGAACTTTCTAATGCGAAGACTATGAAGCCAAAACATCAGTCAAGGACTCTCGTAGCTACCACTGCTGAGACTCAACCATGGTTCTTGCCAAGTAGTAAAGGGCCTGCTGGAGCTGGTTCCTGGAAAGAGATATCAGGAACAGGAATTTTACCGAACTGGTCAAATAGTTACGAGCGAGAACTACCCTTAAAACCTGGTCATGTCAAAAAGGGAAAGACAAGACGCTGGAGCCTGAAATCAGCTAACATGCAAGATAATGAAATGGAGTTGTCTCATAATAAGTTCCCAGAGCATGCGGCTGCCTTTATGCTTCCAGCTATGCAAGGCTTCGATAAGAAAAGACATGGGGTGGACTTGTTGAATAGGGATTTCATTGTCTTGGGAAAACTCATATATATGCTTGGTGTGTGCATGAAATGTGCAGCCATGCATCCTGAAGCATCTGCACTGGCCCCTCCTCTTTTGGATATGTTAAGATCCAGTGAGGTATGCCATCACAAGGAAGCGTATGTGAGGCGAGCTGTTCTATTTGCAGCTTCATGCATACTGGTAGCAATACATCCCTCTTACGCAGTATCTAGCTTGCTCGAAGGAAATGCTGAAATATCTGAAGGACTTGAATGGGTTCGCACATGGTCTCTTCATGTGGCCGACTCTGATCCAGATAGGGAATGCTATATGATGGCTGTGACGTGCCTCCAACTCCATTCTGAGATGGCTCTCCAAGCCACTCGATCACTAGAATCTGCAAACAGTACGTTCAAGCCAAAAAACATTGTTTTTTCTTCAGATTTGTCAAAGGGTACGATCAAAATCCCCTTCTCCGATGTGAAATATTAG 3063 42.93 MGRSNGAHQLGQLPSSLVNFLRETEFRTKIAEVEALTMEDSGKRRELEAKVLERVAEVISVIKNAKHVDQVISALHSLAVLLFPVDASIIAECVGQSYRDQILSSWLPSKSERLECWNAFYNGAAFSALSRVLLLELASSWLACFPFLAKKHLYDIFFVDGAAIEVVQNLVPSLQPNASDGVDVKAVRSNTERLIVLCLLEKDGVLQMAKEFGESCKYENYVTERTIPATSKITNQFLSLAEAKAFSNIELDGTMMFVGETFSRICRRGSADLLLNELIPRIMKHVHDVVMSNIHSAITGVFESNPNSQFWLKIMETIKDNYAVERISEQLLHQLAATCESDIDAYWVLWLLFHRSLRVRMSVRSIFVDKFLVWKVFPIHCLRWVLQFAILECPPDANCLKKGHNNSSLLMTMQRLVEVWSKKEFVQSATIEQQAYISAAVGLSLELMSKEELDETKTVMHSILQGVSCRLENPNQWVRKMASNVALVFSKVIDPKNPLYLDDSCMGDTIDWEFGSATHRKGTIDCTIDAQTGSKETKASTTLVQKKEATRAARVGTGHNIRSKNKKSWEFKLADPDEVVDPASLNCGSISEDDNDDNESDTSDSTSDSSLQPYDMSDDDTDLKKKLSQLVDVVGSLRKSDDVEGVERALDVSEKLIRASPDELRHVASDLVRTLVQVRCSDIAIEGEEDSTEDKRQRALVALVVMCPVESLNILNKLLYSPNVDTSQRIMILDSMTEAAQELSNAKTMKPKHQSRTLVATTAETQPWFLPSSKGPAGAGSWKEISGTGILPNWSNSYERELPLKPGHVKKGKTRRWSLKSANMQDNEMELSHNKFPEHAAAFMLPAMQGFDKKRHGVDLLNRDFIVLGKLIYMLGVCMKCAAMHPEASALAPPLLDMLRSSEVCHHKEAYVRRAVLFAASCILVAIHPSYAVSSLLEGNAEISEGLEWVRTWSLHVADSDPDRECYMMAVTCLQLHSEMALQATRSLESANSTFKPKNIVFSSDLSKGTIKIPFSDVKY 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3923878 3934595 - Lsi02G004720.1 Lsi02g00472 655214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00472 1020 PANTHER TELOMERE LENGTH REGULATION PROTEIN TEL2 FAMILY MEMBER 45 988 - -
Lsi02g00472 1020 MobiDBLite consensus disorder prediction 535 559 - -
Lsi02g00472 1020 Gene3D - 622 759 IPR038528 -
Lsi02g00472 1020 Pfam Telomere length regulation protein 629 740 IPR019337 -
Lsi02g00472 1020 MobiDBLite consensus disorder prediction 580 621 - -
Lsi02g00472 1020 SUPERFAMILY ARM repeat 446 930 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00472 K11137 TELO2, TEL2; telomere length regulation protein - csv:101210804 1751.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g910 . . . . . . . . Cmo13g00812 . . . . . . Cpe20g00330 . . . . . . . . . . . . . . . . Cone16ag0044 . . Lsi02g00472 Csa01g00929 Chy12g01198 Cme12g01622 . . . . . Bpe15g00197 Bma03g01277 . Sed08g2461 . . Cma13g00780 . Car13g00628 . . . Bhi08g01705 Tan05g2912 Cmetu12g0083 . . . . Cla03g00328 Cam03g0345 Cec03g0336 Cco03g0349 Clacu03g0346 Cmu03g0952 Cre03g0644 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010283 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00472 Lsi_Chr02 FPKM 10.587514 11.057574 21.311472 20.034336 22.632072 25.430443 24.015268 21.18434 19.730797 20.906099