Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00474 TTCCGTACGAATTACGACATGTCGTTTCACCACAGGAACGATTCAGATCCCCCGGCCTCCAAACTTAGCACAGCCCGGCAGCGCTCGTCTTCATCTTCTTCGACTGAGAAAAAGGATCGGTGGAGTTCTGAGAAGCATCGAAATCAATGGCGAAAGCGTCAACAACCAGTAATATTTATTGACCTCGATCACCCGACTACAGGGCCTGGTAGCAGGAATGAGTTAGAAGAATCTGAGAATGTTAAAAATTTTCAGCTTGTATCCCCCTCCGTGTCAGGCACCGGTCCTGTTCGTCGATGCAAGCAATCCACAAGGAAAGTTGGACGCAATGGTGCAATTCCTATTCGGAAAAGGAAGCTCGACTCTAGAACTTTTGAATATTGTTTTCAGAATTTATGGAGAAGCTCTCCAGAAGAGAAGAAGATTCAGTTTACATACCTTGACTGCTTATGGTTTAGCTTGTACTTGAAAGCAGCCCACAGAAGAAAGGTCCTGAGATGGATCAAGGACAAACAAATATTTTCAAAGAAATATGTCTTTGTTCCTATCGTTTGCTGGAGTCACTGGAACCTCTTGATATTTTGCCACTTTAATGAGAGCCCGGGGTCAAAAACCAGAAAACCATGCATGTTATTGCTTGATTCACTTCAGGAGGCAAATCCAAGGCGGCTTGAACCAGAGATTAGAAAATTTGTGTTGGACATTTTCAAAGAAAATGGCAAATGCAAAAACTTGAATGTTTGTAAAATTCCTCTCATGGTGCCTAAGGTGCCACAACAGAAAAATGGCGATGAATGTGGCAAATTTGTTTTGTACTTCATTCATTTGTTTATGGAGGCTGCTCCAGCAAATTTTCGCATCAAGGATTACCCTTACTTTGTGAGCCTTTTATCCTTACGCACTTCCACTTTAAAAGCATGCATCAATGACATTTTCTTCAGCAATAATTCTTCCAAACGCTGTAGAGGTTCCATTAACGAGCTGGATTGGTGCCTTGCAGATGAAAGAGAATTGGTTTACGGAAGAAGGTGTGTGCCAATTCTACAAGGCATTCGGCCATTCCGATGA 1068 42.51 FRTNYDMSFHHRNDSDPPASKLSTARQRSSSSSSTEKKDRWSSEKHRNQWRKRQQPVIFIDLDHPTTGPGSRNELEESENVKNFQLVSPSVSGTGPVRRCKQSTRKVGRNGAIPIRKRKLDSRTFEYCFQNLWRSSPEEKKIQFTYLDCLWFSLYLKAAHRRKVLRWIKDKQIFSKKYVFVPIVCWSHWNLLIFCHFNESPGSKTRKPCMLLLDSLQEANPRRLEPEIRKFVLDIFKENGKCKNLNVCKIPLMVPKVPQQKNGDECGKFVLYFIHLFMEAAPANFRIKDYPYFVSLLSLRTSTLKACINDIFFSNNSSKRCRGSINELDWCLADERELVYGRRCVPILQGIRPFR 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3937759 3940955 - Lsi02G004740.1 Lsi02g00474 655216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00474 355 SUPERFAMILY Cysteine proteinases 118 293 IPR038765 -
Lsi02g00474 355 MobiDBLite consensus disorder prediction 1 79 - -
Lsi02g00474 355 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 46 311 - -
Lsi02g00474 355 PANTHER CYSTEINE PROTEINASES SUPERFAMILY PROTEIN 46 311 - -
Lsi02g00474 355 ProSiteProfiles Ubiquitin-like protease family profile. 97 277 IPR003653 GO:0006508|GO:0008234
Lsi02g00474 355 MobiDBLite consensus disorder prediction 1 17 - -
Lsi02g00474 355 MobiDBLite consensus disorder prediction 32 51 - -
Lsi02g00474 355 Pfam Ulp1 protease family, C-terminal catalytic domain 160 286 IPR003653 GO:0006508|GO:0008234
Lsi02g00474 355 Gene3D Adenoviral Proteinase; Chain A 104 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00474 - - - csv:101212106 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00474 Lsi-Chr2:3937759 Lsi04g00545 Lsi-Chr4:5004405 2.08E-13 dispersed
Lsi02g00474 Lsi-Chr2:3937759 Lsi08g01025 Lsi-Chr8:18813324 1.64E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g911 . . . . . . . . . Cmo18g00191 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0043 . . Lsi02g00474 Csa01g00931 Chy12g01196 Cme12g01619 . . . . . Bpe15g00199 Bma03g01275 . Sed01g1592 . . . Cma18g00215 . Car18g00100 Cpe09g00983 . Bhi08g01707 Tan05g2915 Cmetu12g0042 Lac10g0545 Hepe07g2155 . . Cla03g00330 Cam03g0346 Cec03g0337 Cco03g0351 Clacu03g0347 Cmu03g0953 Cre03g0646 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009589 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00474 Lsi_Chr02 FPKM 2.836229 2.643301 2.132479 1.752102 4.463886 4.460975 5.031272 12.281065 12.569032 10.964228