Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00475 ATGGAAGGCCAAGAGGGAACTCAGCAGCCTCATCTCGTTCTTGCTCACAAGCTTTTCCTTCTAACTCATCCTGATGTTCAAGATATCGAGAAGGTCCGTCTCACAGAGGAAGTATTGGCTTCCGTTAAAGCAGATGATATGGCTCCGTTATACGAAACCCTAACCGGCAATTCGTTGTTGGATTTGGATCGGAGCGTGTTGGACTCGATGCGTGCGAAGAATGAGGAGGAGTTGAAGAAGCTGGACGAGAAGATTGCTGATGCTGAAGAAAACTTGGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCCAAATCACTTTTTTTCATTCGCATTGGTGATAAGGACAGAGCACTGGAGCAACTCAAGGTAACTGAGAGCAAAACAGTTGCAGTTGGTCTAAAGATGGATTTGGTTTTCCATACATTACAGCTTGGATTTTTCTATATGGACTTCGATCTGATCTCCAAAAGTATTGACAAAGCGAAAAACTTGTTCGAAGAAGGTGGTGATTGGGAAAGAAAGAATCGTCTGAAGGTGTATGAAGGCTTGTACTGCATGTCCACTCGAAACTTTAAGAAAGCAGCCAACTTGTTTTTGGATTCCATCTCAACTTTCACCACCTATGAACTTTTTCCTTATGACACATTCATATTCTATACTGTTCTCACAAGCATTATATCATTGGATAGAGTGTCTCTAAAGCAAAAGGTAGTTGATGCTCCTGAGATATTGACGGTGATTGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCTTTGTATGACTGTCAATATAAATCATTTTTCTCAGCCTTTGCTGGTCTGACAGAGCAAATAAAATTAGACCGTTATTTGCATCCACACTTCAGGTATTACATGAGAGAGGTCAGAACTGTCGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACTATCGAAGCTATGGCAAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGGAATTATCTCGTTTTATTGCTGCGGGAAAACTTCATTGCAAGATTGATAAAGTAGCAGGTGTTCTTGAAACTAATCGGCCTGATTCAAAGAATGCACTGTATCAAGCTACCATCAAGCAAGGAGACTTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTAATTGATCTAGATGTTCAAGAGAAGCTCTCTGTGCAGTTCAAACCTTGGGAACGTTCTTTTCAGTTCTGGGTCCGTGTTGCAGATATCTACACTGGTTACAAGGTGCTTCAGCTACGGGTGAAATTCGAGAAGGATGTGCAGAAACAGGAGGCAATGTGGGAGAATCAGCATGAACATGCAGCTGAGAAGATATATGCTATGTGCTCCGAAATGGGTGGTTTCTTCCTTAAGCTGGATTTTATGAATGAGGTTGCTCAAGTTATTGGGAAGCCGGATTTGGCCCCAGCTGCATGGGTGAAGAGGCTTGTTACATTGTGTGATCAAGCACCAGCAACACCTTTTGATGTTGTTCAACATGTTGTGGAGAACGAACTGCACAGAAGTCTTGGTGAAGTCTTCGAAACATTTGATCCTCACCCTCTTGGTTCGGCTTCGATTGCTCAGGTTCACAGAGCTAGGCTAAAGGGTGACAGGAATGATGTTGTGGTCAAGGTGCAACATCCGGGAACTGAGGATCTAATGATGACTGATATCCGCAATTTGCAAGCCTTTGCCTTATACATGCAAAAGACAGATATCAAATTCGATCTATATTCTGTAACGAAGGAAATAGAGAGACAGATTGGATACGAATTTGACTTTGAGAGGGAGGCCAATGCTATTGAAAGGATCCGACATTTTCTATATAGCAACAACAAAAAGAGTCCGGTATTGGTGCCACAAGTGATGAAGAATATTGTTACCAGGAGGGTGTTGGTGATGGAATATATTGATGGGATCCCAATCCTCAATCTTGGTGATGAAATAGCAAAGAGAGGCATAGATGCTAGCGGCAAGATTGCTTTAGCAGCAAAGCAATTTGCTAGCTTTAACGTCTTGACTTTCAATTTCCCTGTTTCAATCATGAATCGAGCTGAAAGCAGTTTCGTTCCTCCATTTTATCAGGTAGCATTGCTTGATTACGGGCAAGTGAAGGATCTTCCTGACCAATTGAGGCTTGGTTATGCTAAACTTGTTCTTGATATTGCAGATGGTGACGCTACAAGAGTAGCTGAAACCTTCAGGGAGCTTGGGATAGATACAGTAAGCAATTGTGAAAATGCACAAGAAGAACTATTTAAGTTGGCACGGGTAATGTTTGATACAAGGTTACCCCCCGGAAAGGTGTTGATGCAACCTTTTGCAGAGGACTCTTCAATAAAGAAAGTTGGTGTTCAGTCGTTTCCAGAGGAACTATTTTCCATACTTCGGACAATTCAAATCCTTAGAGGGTTAAGTGTTGGTCTTGGGATCAATTACTCGTGCTCCGAACAATGGCGACCAATTGCAGAAGAAGCTTTGTTGCTTGCTGGTAGGCTAGAAGAGACTACCTTAATGAAGCTTAAACTCGGTTCTCAACTCGACTCAAGTCCACCCATCAAGGAAGATGCTTTAGAGGATGGAGAAACTGATTCTAACTCAAGTTCATCGTGCAATGAGGCAATGAACACAGAGACATGCGCTAGTTTTCCTAAAACAGATTTGATGACTGTAGATTCAGATTATTCGACTACAAGTACTACTACTACATCTGAAGCTTCTGAGAATTGTCAATCAGCAGAAAGTTCAACGCAGCCTAAGATAAAAAACTCTATTCTTCACCTATTCTCTAAATTCAAGAATTCTCCAGAAATTTCATCAATCATGGAGGAGCCAGCGATGACGGAAGACTTCTGTTGCATGGTTATGTCAGCGAGTTCTAGCGCATCTCAGTCTACTTCCGATATCGAGCTAAATTCAGAGCAAGAATCCATTGGTTCAACTATGTCATCAGAAGAGGTTCTATAA 2976 41.77 MEGQEGTQQPHLVLAHKLFLLTHPDVQDIEKVRLTEEVLASVKADDMAPLYETLTGNSLLDLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDSKNALYQATIKQGDFLLNRIQKLSRVIDLDVQEKLSVQFKPWERSFQFWVRVADIYTGYKVLQLRVKFEKDVQKQEAMWENQHEHAAEKIYAMCSEMGGFFLKLDFMNEVAQVIGKPDLAPAAWVKRLVTLCDQAPATPFDVVQHVVENELHRSLGEVFETFDPHPLGSASIAQVHRARLKGDRNDVVVKVQHPGTEDLMMTDIRNLQAFALYMQKTDIKFDLYSVTKEIERQIGYEFDFEREANAIERIRHFLYSNNKKSPVLVPQVMKNIVTRRVLVMEYIDGIPILNLGDEIAKRGIDASGKIALAAKQFASFNVLTFNFPVSIMNRAESSFVPPFYQVALLDYGQVKDLPDQLRLGYAKLVLDIADGDATRVAETFRELGIDTVSNCENAQEELFKLARVMFDTRLPPGKVLMQPFAEDSSIKKVGVQSFPEELFSILRTIQILRGLSVGLGINYSCSEQWRPIAEEALLLAGRLEETTLMKLKLGSQLDSSPPIKEDALEDGETDSNSSSSCNEAMNTETCASFPKTDLMTVDSDYSTTSTTTTSEASENCQSAESSTQPKIKNSILHLFSKFKNSPEISSIMEEPAMTEDFCCMVMSASSSASQSTSDIELNSEQESIGSTMSSEEVL 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3944421 3960799 + Lsi02G004750.1 Lsi02g00475 655217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00475 991 Coils Coil 67 98 - -
Lsi02g00475 991 Pfam ABC1 atypical kinase-like domain 488 736 IPR004147 -
Lsi02g00475 991 MobiDBLite consensus disorder prediction 897 921 - -
Lsi02g00475 991 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Lsi02g00475 991 PANTHER 26S PROTESOME SUBUNIT 6 3 386 IPR019585 -
Lsi02g00475 991 Pfam PCI domain 253 354 IPR000717 -
Lsi02g00475 991 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Lsi02g00475 991 CDD ABC1_ADCK3-like 488 737 - -
Lsi02g00475 991 Gene3D - 7 337 - -
Lsi02g00475 991 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 - -
Lsi02g00475 991 MobiDBLite consensus disorder prediction 850 878 - -
Lsi02g00475 991 MobiDBLite consensus disorder prediction 966 991 - -
Lsi02g00475 991 PANTHER BNAC08G11800D PROTEIN 3 386 - -
Lsi02g00475 991 SUPERFAMILY Winged helix DNA-binding domain 282 363 IPR036390 -
Lsi02g00475 991 SUPERFAMILY Protein kinase-like (PK-like) 491 682 IPR011009 -
Lsi02g00475 991 SMART PINT_4 287 370 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00475 K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7 K08869 csv:101212595 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00475 Lsi-Chr2:3944421 Lsi04g02215 Lsi-Chr4:29201677 5.53E-37 dispersed
Lsi05g02008 Lsi-Chr5:27130861 Lsi02g00475 Lsi-Chr2:3944421 6.11E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g913 . Blo16g00252 . . . Bpe13g00214 Bma06g00245 . Cmo13g00814 . . . . . . Cpe20g00328 . . . . . . . . . . . . . . . . Cone16ag0041 . . Lsi02g00475 Csa01g00933 Chy12g01194 Cme12g01617 . . Bda11g01613 . . . . . Sed08g2459 . . Cma13g00782 . Car13g00631 . . . Bhi08g01709 Tan05g2923 Cmetu12g0722 Lac10g0547 Hepe07g2153 . . Cla03g00331 Cam03g0347 Cec03g0338 Cco03g0353 Clacu03g0348 Cmu03g0954 Cre03g0647 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001915 4 2 2 2 2 1 4 2 1 2 1 1 3 2 2 3 1 6 3 1 2 2 2 2 2 1 2 2 5 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00475 Lsi_Chr02 FPKM 1.247853 1.65509 0.339376 0.0 10.002159 12.716079 10.259545 2.967786 2.8199 1.888026