Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00479 ATGGGATTTGGAAGAATTGGCAGGTTGGTCGCTAGAGTTGCTTTGCAGAGAGACGATGTTGAACTCGTTGCCGTCAACGATCCATTCATTACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGTCACTGGAAGCACAGTGATGTGAAGGTGAAGGACTCTAAGACCCTTCTTTTTGGTGAGAAGGCTGTCACTGTTTTCGGCGTCAGAAATCCGGAGGAGATCCCATGGGGTGAGACCGGTGCAGAATACATTGTAGAATCCACTGGTGTTTTCACAGACAAAGATAAAGCTGCTGCTCATTTGAAGGGTGGTGCTAAGAAGGTTATCATCTCTGCCCCCAGCAAGGATGCCCCCATGTTTGTTGTAGGAGTCAATGAGAAGGAATACAAGCCAGAACTTAACGTTATTTCTAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTGCAAAGGTTATCAATGACAGATTTGGCATTGTTGAGGGTCTGATGACCACTGTTCACGCAATCACTGCCACACAAAAGACAGTTGATGGGCCATCCAGCAAAGACTGGAGGGGTGGAAGAGCTGCTTCATTTAACATCATTCCAAGCAGCACTGGAGCTGCCAAGGCTGTCGGCAAAGTCCTCCCTGCATTGAATGGGAAATTGACCGGAATGTCTTTCCGTGTTCCTACCGTCGATGTCTCTGTCGTCGATCTTACAGTGAGGTTGGAAAAGAAGGCCTCTTATGAGGACATTAAGGCAGCCATCAAGGAAGAGTCTGAGGGAAAATTGAAGGGAATTTTGGGGTACACTGAAGACGATGTCGTGTCCTCTGACTTCGTTGGTGACAGCAGGTCAAGCATCTTCGATGCCAAGGCAGGGATTGCATTGAACGATAACTTTGTGAAAGTTGTCTCGTGGTACGACAACGAAGTAGGATACAGTACTCGTGTCGTTGACTTGATTGTCCACATCGCATCTGTCCAATCCACGGTATATGCTAATTCAAGACAGTGGGCTCAACACAGAAGTAGATATCCATCTCACTGTCCCTACCAAAACTCAGCCCTGCAATTTTCCTTTGAGTGGAGGAATCAAACCCCCTTTGGAATTTCAAACATTACGCTAAACTACAACCATGCATTTGGCAGTGGACATCGACCCACCACTTTCAGCTTAATTATTTTGCTCACTTTTCAAGACTCCCCATTTCTTTCAGCTACCTCCTACGGACCACCACCATACATTCCCGTTCCGTTTCACACCAGTTATCCTCTTCATTTGCCACCGACCGCCGTTCCCACTTTCTTGTCGCTTTCTTTTTCTCTGGACTTTAAATCCCTTCCTTCTTCCATTCTCAGCCATTAG 1368 46.78 MGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHSDVKVKDSKTLLFGEKAVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELNVISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKKASYEDIKAAIKEESEGKLKGILGYTEDDVVSSDFVGDSRSSIFDAKAGIALNDNFVKVVSWYDNEVGYSTRVVDLIVHIASVQSTVYANSRQWAQHRSRYPSHCPYQNSALQFSFEWRNQTPFGISNITLNYNHAFGSGHRPTTFSLIILLTFQDSPFLSATSYGPPPYIPVPFHTSYPLHLPPTAVPTFLSLSFSLDFKSLPSSILSH 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3994053 3997628 + Lsi02G004790.1 Lsi02g00479 655221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00479 455 Gene3D Dihydrodipicolinate Reductase; domain 2 145 310 - -
Lsi02g00479 455 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 2 320 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Lsi02g00479 455 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 144 151 IPR020830 GO:0016620
Lsi02g00479 455 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 167 183 IPR020831 GO:0016620
Lsi02g00479 455 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 105 118 IPR020831 GO:0016620
Lsi02g00479 455 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 140 158 IPR020831 GO:0016620
Lsi02g00479 455 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 224 241 IPR020831 GO:0016620
Lsi02g00479 455 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 264 279 IPR020831 GO:0016620
Lsi02g00479 455 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 145 308 - -
Lsi02g00479 455 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 151 308 IPR020829 GO:0016620
Lsi02g00479 455 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 329 IPR020831 GO:0016620
Lsi02g00479 455 SMART gp_dh_n_7 1 146 IPR020828 GO:0051287
Lsi02g00479 455 Gene3D - 2 323 - -
Lsi02g00479 455 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2 99 IPR020828 GO:0051287
Lsi02g00479 455 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 329 - -
Lsi02g00479 455 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 162 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00479 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101213074 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00479 Lsi-Chr2:3994053 Lsi03g00370 Lsi-Chr3:4340717 0 dispersed
Lsi02g00479 Lsi-Chr2:3994053 Lsi02g00480 Lsi-Chr2:3997692 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001932 1 3 2 4 3 1 2 1 1 3 1 1 3 3 3 4 1 3 2 1 3 3 3 1 1 3 2 2 3 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00479 Lsi_Chr02 FPKM 3.071715 4.140789 5.982136 7.273802 1.609599 1.229394 1.944845 2.203728 2.426343 3.663956