Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00483 ATGGGATCGCTGGGAATTTATTCTGAATCAGGAATTACGAAGAAGGGTAGCAGAGGAGGCTATGACGTTCCAGAGGGAGTGGACATTCGAGGACGCTATGATGAAGAATTTGCCAAGATTCTCAACAAAGAAGCCTTGCTGTTTGTGGCTGATTTACAGAGAACTTTCAGAAACCACATCAAGTATTCGATGGAATGCCGAAGAGAAGCTAAGAGGAGGTATAATGAAGGAGCCTTGCCCGGGTTTGATCCAGCGACCAAGTATATAAGGGATTCTGAGTGGACATGTGCCCCAGTCCCATCGGCGGTTGCTGATCGGAGAGTGGAGATCACCGGACCTGTGGAGCGGAAGATGATCATCAACGCACTTAATTCTGGAGCTAAAGTTTTCATGGCTGACTTTGAAGATGCACTGTCACCAAATTGGGAGAATTTGATGAGAGGGCAAATTAATCTTAAGGATGCAGTAGATGGGACTATAAGCTTCCATGACAGAGCTAGAAACAGAGTTTATAAGCTAAATGATCAAATAGCCAAGCTCTTTGTTCGCCCTCGAGGTTGGCACTTGCCTGAGGCTCATATCTTCATCGATGGCGAGCCTGCCACCGGCTGTCTTGTGGACTTTGGGCTCTACTTTTACCATAACCATGCCAATTTTCGACGCTCTCAAGGTCAAGGTTATGGCCCTTTCTTTTACCTTCCCAAAATGGAGCACTCCAGAGAAGCTAAAATATGGAACAGTGTATTTGAGAGGGCAGAGAAGATGGCAGGGATAGAGAGGGGTAGCATCAGGGCCACTGTCCTAATTGAAACACTTCCAGCAGTGTTTCAAATGGATGAAATACTCTATGAGCTGAGAGATCACTCTGTGGGATTGAACTGTGGTAGATGGGATTACATATTCAGCTATGTCAAAACCTTCCAAGCTCACCCAGATCGCCTATTACCCGATCGGGTCCAAGTCGGTATGACCCAACATTTCATGAGGAGCTATTCTGATCTCCTTATTAGAACTTGTCATAGACGTGGTGTCCACGCCATGGGAGGCATGGCTGCTCAAATTCCGATTAGAGACGATCCGAAGGCGAATGAGGTAGCACTTGAGCTAGTGAGGAAGGACAAATTGAGGGAAGTAAAAGCAGGACATGATGGAACATGGGCAGCACATCCAGGATTAATCCCAGCTTGTATGGAAGTCTTCACCAACAACATGGGGAATGCCCCCAACCAAATTCGATCCGTGAGACGTGACGATGCTGCAAACCTAACCGAAGAAGACCTCTTACAGCGACCGAGGGGTGTTCGTACAATGGAAGGGCTTCGCTTGAACACCCGAGTTGGAATTCAATACTTAGCGGCATGGCTAACCGGAGCTGGCTCGGTGCCTCTATACAACCTTATGGAAGATGCAGCCACAGCAGAAATCAGTAGGGTTCAAAACTGGCAATGGTTGAAGTATGGAGTGGAATTGGATGGAGATGGGCTTGGTGTGAGAGTGAACAAGGAACTGTTTGGGAGAGTGGTGGAAGAAGAAATGGAAAGGATTGAAAAGGAAGTTGGGAAAGAGAGATTCAAGAAGGGAATGTACAGAGAAGCTTGCAAGATGTTTACAAGGCAATGCACAGCTCAAAATTTGGATGATTTTCTGACCTTAGATGCTTATAACTATATTGTGATACATCATCCAAGGGAATTGTCCAAGCTTTGA 1707 46.28 MGSLGIYSESGITKKGSRGGYDVPEGVDIRGRYDEEFAKILNKEALLFVADLQRTFRNHIKYSMECRREAKRRYNEGALPGFDPATKYIRDSEWTCAPVPSAVADRRVEITGPVERKMIINALNSGAKVFMADFEDALSPNWENLMRGQINLKDAVDGTISFHDRARNRVYKLNDQIAKLFVRPRGWHLPEAHIFIDGEPATGCLVDFGLYFYHNHANFRRSQGQGYGPFFYLPKMEHSREAKIWNSVFERAEKMAGIERGSIRATVLIETLPAVFQMDEILYELRDHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVQVGMTQHFMRSYSDLLIRTCHRRGVHAMGGMAAQIPIRDDPKANEVALELVRKDKLREVKAGHDGTWAAHPGLIPACMEVFTNNMGNAPNQIRSVRRDDAANLTEEDLLQRPRGVRTMEGLRLNTRVGIQYLAAWLTGAGSVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGVRVNKELFGRVVEEEMERIEKEVGKERFKKGMYREACKMFTRQCTAQNLDDFLTLDAYNYIVIHHPRELSKL 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4038393 4042355 - Lsi02G004830.1 Lsi02g00483 655225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00483 568 PANTHER MALATE SYNTHASE 18 568 IPR006252 GO:0004474|GO:0006097
Lsi02g00483 568 ProSitePatterns Malate synthase signature. 286 301 IPR019830 GO:0004474|GO:0006097
Lsi02g00483 568 PIRSF Malate_synth 20 559 IPR006252 GO:0004474|GO:0006097
Lsi02g00483 568 CDD malate_synt_A 40 558 IPR006252 GO:0004474|GO:0006097
Lsi02g00483 568 PANTHER MALATE SYNTHASE 18 568 - -
Lsi02g00483 568 TIGRFAM malate_syn_A: malate synthase A 40 557 IPR006252 GO:0004474|GO:0006097
Lsi02g00483 568 Gene3D Malate synthase, domain 3 23 433 IPR046363 -
Lsi02g00483 568 SUPERFAMILY Malate synthase G 18 558 IPR011076 GO:0003824
Lsi02g00483 568 Gene3D Malate synthase, domain III 434 558 IPR044856 -
Lsi02g00483 568 Pfam Malate synthase 28 558 IPR001465 GO:0004474|GO:0006097
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00483 K01638 aceB, glcB; malate synthase [EC:2.3.3.9] - csv:101214523 1127.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g152 . . . . . Bpe13g00208 . . Cmo13g00822 . . . . . . Cpe20g00320 . . . . . . . . . . . . . . . Cone2ag0959 . . . Lsi02g00483 . . . . . Bda11g01607 . . . . . . . . Cma13g00791 . Car13g00639 . . . . . . . . . . Cla03g00340 Cam03g0355 Cec03g0346 Cco03g0361 Clacu03g0356 Cmu03g0961 Cre03g0654 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012250 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00483 Lsi_Chr02 FPKM 7.080008 9.824724 18.515272 18.563156 23.599758 26.680904 26.70892 4.748763 4.238062 4.297223