Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi02g00484 | ATGAGAAAGGGTAAAGTTTGTGACCGGAAGCATCAAGCCAATTTCGCTTCAATGGCTGACCATTCTGTTGATTCCCGGAGCGGTTTCTGTCCTCAAACCAAGATTTACAAGAGCCTCCGACCACCGTTATCTCTTCCGCCGTTATCTCAGCCACTCACCGTTGCCGGACATGCCCTATCTGTTCTCCGATCATCCCCTCCTCCGCCCAACACTGCTGCTCTCATCGACTTCAACTCCGGCGTCACTGTCTCTTACGCCCTTTTCCTCCGTCAAATCCGAAACCTCACCTCTAACCTTAGAGCTCTTTACTCTTTCTCCAATGGTCAAGTGGCTTTTATTCTTTCACCGACTTCTCTACAAATCCCTGTGTTGTATTTCGCTCTCTTATCTCTCGGCGTTATTGTCTCTCCGGCTAATCCAATCAGTTCCGAATCGGAGATTGCTCACCAGGTTAGTCTCTGTAAACCGGTCATTGCCTTCGCTACTTCCTCAACGGCGTCCAAGCTCCCGAGGCTTCCACTTGGCATCGTACTGATAGATTCACCGGAGTTTCTTTCTTTGATGACTGAAAGTAGTCAAACGGATGGAGTAAACGATGACATTGTCGATCTCAAAATCAATCAAAACGACTCCGCGGCGATTCTGTACTCTTCAGGGACTACCGGACGAGTGAAAGGCGTCTTACTCTCTCACCGGAACCTCATATCGGCGATCACTGGGGTTCAAGTATTAGAGAAGACGCCCGTCGAAGTAGAGATTGAGCCACATCCCGTAGCTCTGTGTCTGTTACCTCTGTTCCATGTTTTCGGGTTCTTTATGTTGTTTCGATCGATTTCAGAGGGCAATACATTGGTTCTGATGCGTAAATTCGACTTCGAGTGGATGTTAAGAGCAGTGGAGAAGTATAGGGTTACATACATCCCGGTTTCTCCGCCGCTGATTGTGGCGATGGCCAAATCGGAGCTGGTGGCAGAGTATGATCTCAATTCTCTTCAAATCCTGGGATGCGGCGGCGCTCCTCTTGGAAAAGAAGTTATCGATAAATTCCATGTCAGATTTCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTGCAGGAGCGGCATCAAGAACTGTGGGGCCTGAAGAATGCAGTAATGCAGGTTCAGTAGGTCGTCTATCTGAAAATATGGAAGCCAAAATAGTTGATCCTTCATCTGGAGAAGCCTTACCTCCTGGTCACAAAGGAGAGCTTTGGATTCGAGGTCCAGGAATTATGAAAGGTTATGTTGGAGACGAAAGGGCAACCGCTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTTTGTTACTTTGATTCTGATGGATTTCTCTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCCATCCCGAGATCCTTGATGCCGCTGTGATACCCTATCCTGACGAAGAAGCTGGAGAGATTCCTATAGCTTATGTGCATCCGCGTGCTCGATCACGCATCACTTTCTTCGAGTCCACTTCCATGGCGGATCGGAATCCCAACTTCAACGCCGCTCATTTCGTTGATCTTCGAAGCGGTTTCTGTCCTCAGACGAAGATTTTCCACAGCCTCCGACCACCGCTCTCACTTCCACCATTATCTCAGCCTCTCTCCGTCACCCAACACGCCCTTTCTCTCCTTCAATCATCTCCTCCCCCTGCAAACGCCACCGTTCTCATCGACTCCAACTCCGGCCTCCATCTCTCCTACGCCATTTTCCTCCGTCAAATTCGAACCCTCGCCTCAAATCTCAAAGCTCTAACCTCCCTCTCCAATGGTCAAGTGGCGTTTATTCTCGCACCGACTTCTCTGCAAGTCCCTGTTCTGTATTTCGCTTTGTTATCTCTCGGTGTCATTCTCTCTCCGGCTAATCCAACCAGTTCCGAATCAGAAATTTCTCATCAGATTCGACTCAGTAAACCGGTCATTGCCTTCGCTACATCCTCAACGGCGTCCAAGCTCCCTAGGTTTCGATTCGGAACCGTCCTGATCGATTCACCTCACTTCCTTTCCATGATGACTGAAATCAACCGATCCGATGGTCTCGCTGACATCAAAATCGATCAATCCGACTCAGCAGCGATTCTGTACTCGTCAGGTACCACAGGGCGAGTGAAAGGCGTGTTACTGAGTCATCGGAACCTTATTGCGGTGAACTCAGGGCCTACTGCTCTTCAATCTGAGATCAAAGAAGGAGAAATGGAGCCACATCCGATTTCTCTGTGTCTGTTGCCTTTGTTTCATGTTTTCGGATTCGTGATGTTGCTTCGAGCGATTTCGCGAGGAGAAACGTTGGTTCTGATGCAGAGATTCGATTTCGAAGGGATGCTTATGGCAGTGGAGAAGTTTAGGGTTATGTACATCCCTGTTTCTCCGCCGTTAGTGGTGGCGATGGCGAAGTCGGAACTGGTAGCGAAATACGATCTCAGTTCTCTTCAAATTTTAGGGTGCGGCGGCGCTCCCCTTGGAAAAGACGTGATCGATAAATTCCATCAGAAATTGCCCGACGTTGAAATTGTCCAGGGATATGGCTTGACAGAGAGTACAGCGGGGGCAGCAAGAACTCTGGGGCCTGAGGAAAGCAGCAACACAAATTCAGTAGGTCGCTTATCTGAAAATATGGAAGCCAAGATAGTGGATCCTGCATCTGGAGAGGCCTTACCTCCTGACCACAAAGGAGAGCTTTGGCTTCGAGGTCCTGTCCCACCTGCAGAATTGGAACATTTGCTTCAATCCAACCCTGAAATAATTGACGTTGCCGTGATACCCTATCCCGATGAAGAAGCTGGAGAGATTCCTATGGCTTATGTTGTTAGAAAGCCTAGAAGCAATATCACCGAGGCTCAAGTTATTGATTTCATTGCAAAACAGGCAATGCTTCATCTCTCAAGAAACTTCAAAATAGCCATGGTTGCGCCGTACAAGAAAATTCGACGAGTTTCTTTTATCGACGCCATCCCAAAATCGCCTGCAGGTAAGATTCTGAGGAGGGAGCTTGCCAAACATGCTCTCTCACATGGTTCTAATAAGTTGTAA | 3126 | 48.02 | MRKGKVCDRKHQANFASMADHSVDSRSGFCPQTKIYKSLRPPLSLPPLSQPLTVAGHALSVLRSSPPPPNTAALIDFNSGVTVSYALFLRQIRNLTSNLRALYSFSNGQVAFILSPTSLQIPVLYFALLSLGVIVSPANPISSESEIAHQVSLCKPVIAFATSSTASKLPRLPLGIVLIDSPEFLSLMTESSQTDGVNDDIVDLKINQNDSAAILYSSGTTGRVKGVLLSHRNLISAITGVQVLEKTPVEVEIEPHPVALCLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFEWMLRAVEKYRVTYIPVSPPLIVAMAKSELVAEYDLNSLQILGCGGAPLGKEVIDKFHVRFPNVEIIQGYGLTESAGAASRTVGPEECSNAGSVGRLSENMEAKIVDPSSGEALPPGHKGELWIRGPGIMKGYVGDERATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEILDAAVIPYPDEEAGEIPIAYVHPRARSRITFFESTSMADRNPNFNAAHFVDLRSGFCPQTKIFHSLRPPLSLPPLSQPLSVTQHALSLLQSSPPPANATVLIDSNSGLHLSYAIFLRQIRTLASNLKALTSLSNGQVAFILAPTSLQVPVLYFALLSLGVILSPANPTSSESEISHQIRLSKPVIAFATSSTASKLPRFRFGTVLIDSPHFLSMMTEINRSDGLADIKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIAVNSGPTALQSEIKEGEMEPHPISLCLLPLFHVFGFVMLLRAISRGETLVLMQRFDFEGMLMAVEKFRVMYIPVSPPLVVAMAKSELVAKYDLSSLQILGCGGAPLGKDVIDKFHQKLPDVEIVQGYGLTESTAGAARTLGPEESSNTNSVGRLSENMEAKIVDPASGEALPPDHKGELWLRGPVPPAELEHLLQSNPEIIDVAVIPYPDEEAGEIPMAYVVRKPRSNITEAQVIDFIAKQAMLHLSRNFKIAMVAPYKKIRRVSFIDAIPKSPAGKILRRELAKHALSHGSNKL | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4044869 | 4058378 | - | Lsi02G004840.1 | Lsi02g00484 | 655226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi02g00484 | 1041 | ProSitePatterns | Putative AMP-binding domain signature. | 725 | 736 | IPR020845 | - | |
| Lsi02g00484 | 1041 | PANTHER | 4-COUMARATE--COA LIGASE-LIKE 9 | 43 | 522 | - | - | |
| Lsi02g00484 | 1041 | ProSitePatterns | Putative AMP-binding domain signature. | 214 | 225 | IPR020845 | - | |
| Lsi02g00484 | 1041 | SUPERFAMILY | Acetyl-CoA synthetase-like | 69 | 518 | - | - | |
| Lsi02g00484 | 1041 | Gene3D | - | 559 | 930 | IPR042099 | - | |
| Lsi02g00484 | 1041 | Gene3D | - | 49 | 463 | IPR042099 | - | |
| Lsi02g00484 | 1041 | PANTHER | 4-COUMARATE--COA LIGASE-LIKE 9 | 553 | 931 | - | - | |
| Lsi02g00484 | 1041 | Pfam | AMP-binding enzyme | 583 | 930 | IPR000873 | - | |
| Lsi02g00484 | 1041 | Pfam | AMP-binding enzyme | 69 | 468 | IPR000873 | - | |
| Lsi02g00484 | 1041 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 43 | 522 | - | - | |
| Lsi02g00484 | 1041 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 553 | 931 | - | - | |
| Lsi02g00484 | 1041 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 931 | 1030 | - | - | |
| Lsi02g00484 | 1041 | PANTHER | 4-COUMARATE--COA LIGASE-LIKE 9 | 931 | 1030 | - | - | |
| Lsi02g00484 | 1041 | Pfam | AMP-binding enzyme C-terminal domain | 935 | 1023 | IPR025110 | - | |
| Lsi02g00484 | 1041 | Pfam | AMP-binding enzyme C-terminal domain | 477 | 512 | IPR025110 | - | |
| Lsi02g00484 | 1041 | Gene3D | - | 931 | 1035 | IPR045851 | - | |
| Lsi02g00484 | 1041 | Gene3D | - | 464 | 536 | IPR045851 | - | |
| Lsi02g00484 | 1041 | SUPERFAMILY | Acetyl-CoA synthetase-like | 585 | 1035 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g00484 | Lsi-Chr2:4044869 | Lsi04g01792 | Lsi-Chr4:25135071 | 1.78E-94 | dispersed | |
| Lsi10g01013 | Lsi-Chr10:14377146 | Lsi02g00484 | Lsi-Chr2:4044869 | 1.19E-07 | dispersed | |
| Lsi02g00484 | Lsi-Chr2:4044869 | Lsi06g01133 | Lsi-Chr6:21580207 | 1.09E-61 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi02g00484 | K01904 | - | csv:101211791 | 884.789 |