Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00493 ATGATTTTTCATATTGAACTTGATGCAAGTTTGCTGGATGTGGAACTTGTGGGAAACTCACGGCCAATATTGTATTGTCTCATGGAACATAAGTCCTCTTTAACTGGTCTACTCACCATGTCTGGCTGCTTGATGCCGATAATCATTTCAAGCTCCCTCAATGGCAGCTTAAAGTTTTGGGATTTAATGTCTGGAATGATTAGGGGAACTCAAGCTCATATAGAGGGGATCACTGCAACTGTTCTTCATCCAACAGAGCAACTTCTGTTCTCTGGGACCGCTGATGGGCAAATTTTTGCTAGCAAGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAACCAATTACTTGCACCAAAAGGACACAAAGGAGCTATTACTGCTCTGGCCTTCAGTCAGATGGATCTAATTTCCGCATCCGAGGATTGTACTGTTTGCAAATGGGACATCGGCAGTCAGAGGATCATACAGAAGCTCGACCATAAGAAAGGGAGAATAACCAATTTGGTAGCAGTTCCACGGTCGTCCTTGATCTCTACATCAAATCGTAAGAGAGTCTTGAATCGATTCTCCATGTCCTCACTCGACAAGTATCCTCTGCCTGCTAACTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCCCTCCAGGAGAATCTGAATTCCATCGGATTCACAAGTACTGGCTCATTGAATCAACAAATACTTGATATGAAGACAGAAGGGACATCAGCAGAAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGAGAATGTGGGCTTCCAGAATGACAAAGAAAGTGATGGACATGAACAACCATCTTCAATCACGGTTACTATACATGATGCGGATTCGATTGTTCGGGCCAGCAAACATTACCTCGTCCTTGAGGAAACAAAAAAATGAAAGAGATCGAGTTGCAAGGAAGAGGGAGAAGCGTCCATTATCATTCCATTAA 972 42.59 MIFHIELDASLLDVELVGNSRPILYCLMEHKSSLTGLLTMSGCLMPIIISSSLNGSLKFWDLMSGMIRGTQAHIEGITATVLHPTEQLLFSGTADGQIFASKLEFGLDNCITIKENQLLAPKGHKGAITALAFSQMDLISASEDCTVCKWDIGSQRIIQKLDHKKGRITNLVAVPRSSLISTSNRKRVLNRFSMSSLDKYPLPANLLKSTIPLFPSLQPLQENLNSIGFTSTGSLNQQILDMKTEGTSAEIQMKVETSLERRMWASRMTKKVMDMNNHLQSRLLYMMRIRLFGPANITSSLRKQKNERDRVARKREKRPLSFH 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4196860 4198937 - Lsi02G004930.1 Lsi02g00493 655235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00493 323 Pfam WD domain, G-beta repeat 118 151 IPR001680 GO:0005515
Lsi02g00493 323 PANTHER WD-REPEAT PROTEIN 18 10 310 IPR045227 -
Lsi02g00493 323 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 160 IPR001680 GO:0005515
Lsi02g00493 323 MobiDBLite consensus disorder prediction 300 323 - -
Lsi02g00493 323 SUPERFAMILY WD40 repeat-like 23 196 IPR036322 GO:0005515
Lsi02g00493 323 SMART WD40_4 114 151 IPR001680 GO:0005515
Lsi02g00493 323 SMART WD40_4 20 61 IPR001680 GO:0005515
Lsi02g00493 323 SMART WD40_4 64 102 IPR001680 GO:0005515
Lsi02g00493 323 Gene3D - 18 277 IPR015943 GO:0005515
Lsi02g00493 323 MobiDBLite consensus disorder prediction 302 323 - -
Lsi02g00493 323 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 10 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00493 K14829 IPI3; pre-rRNA-processing protein IPI3 - csv:101212515 534.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00493 Lsi-Chr2:4196860 Lsi07g00291 Lsi-Chr7:3111053 1.53E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00493 Lsi_Chr02 FPKM 7.079869 8.194965 5.364215 5.72508 11.640813 9.749619 11.651174 3.049079 2.618398 3.626884