Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00499 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAAAGATCTTCGTCCTCGGAGGATAAGCCATCGTCACCGAAGCGTCAAAAGGTGGAAAATGGGTGTGGCACAGAGAAATCGATGCCGGCGGCGGAGAATTCTAAGGAATTATGCACCGCGCCGACTGTGGATCCCGGAGAGCATGGACCTGGCGGTGGTCCGATCGCTGGAGTTGACGTGGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCCGTCGCTCTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTGGGAGACAAGCCTAGGAGTTCATTTTCATCATGGAGTCACTATGCTGCGAAGCAGAATCCAAATTTTGAAACGACAACTCCTTGGTGTAGGCTTCTCTCACAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACAATTAGCGGGACACTTTGCAAGATCAAGCACACTCAGCGTGAGGGTAGTGCTGTGGCTATGCTTGAAAGTACGGGAGGCAAGGGATCAGTGATGGTTAACGGGTTGACTGTCAAGAAGAGCACCAACTGTGTGCTAAATTCTGGTGACGAGGTGGTCTTTGGTGCTTTGGGGAATCATGCTTATATATTTCAGCAACTTATGAATGAGGTTTCAGTTAAAGGTTTAGATGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGTGATCCTTCTGCTGTGGCCGGGGCCTCGATCTTGGCGTCTCTTTCGAGTCTCAGACAGGATATTTCACGTTGGAAGCCTCCTTCTCAGACCAGCAATAAAACACACCAAGGTGCTGAACTTCCTTCTAAATCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTCTTGAAGGCAACTCAAATCCAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGACGCTGTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAGAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACTTCGGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGATGTTCATGCAGGGATTGTTGATGGAAGAGACTTAGAAGTTTCATTTGACAACTTTCCATACTATTTGAGTGAGAATACAAAGAATGTGCTTATTGCTGCTTCTTTCATACACTTGAAGCATAAAGAACATTCAAAGTATACCTCAGAATTAAATACGGTGAATCCACGAATTCTACTTTCTGGTCCCGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGTGCTAAGCTCCTCATATTTGATAGCCATTCATTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGTTGAAGGATGGAATTAATGCAGCTAAGTCTTGTAGCTGTTCTAAACAGAGTATGGTATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTATTCACCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCGAAGAATAATTTTTTAAAAATTGGTGATAGAGTAAGATTTATAGGTTCTGCTTCTGGGGGGATATATCCTACAACATCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAACTCTTCGTCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTAATGCAACCGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATACTTATTGATATTTTATTTGAGGCGGTATTTAGCGAAAGCAGAAATTCTCCTTTCATCTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTTGGAAATTTAGACTCCTATTCTACTTTTAAAAGTAGACTGGAAAAGCTTCCCGACAATGTTATTGTAATTGGCTCTCATACTCATACTGACAACCGCAAGGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTACATGACAGAGGGAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTATTTCCCAATAAAGTTACAATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGTTAGAACGAGATGCCGAAACTCTTAAAATGAAGGGAAATCTTAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGAATGGATTGTGAAGGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGCGAGAGCATTCAATACGGGATCAGCATCTTACAGGCTATCCAGAATGAATCTAAGTGCTTGAAGAAGTCACTTAAGGATGTTGTTACGGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCTAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGCAAGGGGCAATTGACCAAGCCATGCAAGGGTATTCTGTTATTTGGCCCACCTGGAACAGGTAAGACAATGCTCGCAAAAGCTGTTGCTACTGAAGCTGGAGCAAATTTTATCAACATTTCCATGTCAAGCATTACGTCAAAGTGGTTCGGTGAGGGTGAGAAGTATGTTAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCTGGAGAACATGAGGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACGAAGGACACAGAAAGGGTACTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCAAACAGAGCAAAGATACTAAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCGGAATTTGATTTTGATTCGGTTGCTAGTATGACAGACGGATATTCTGGGAGTGACCTTAAGAATCTTTGTGTTGCTGCTGCTCACCGTCCAATTAAAGAGATATTGGAGAAGGAAAAAAAGGCAAGTTCTTTCATTATGAGCGAGCTAGTTGTCACACTGAGCTTGATTTACTCGATAACTTTGGAAGAGGAGCGTGCTGCAGCTCTCGCAGATGGCAGGCCTGCTCCAGCCCTTAGTGGAAGTGAGGATATTCGGCCTCTAAATATGGATGACTTTAAATATGCTCATGAACGGGTATGTGCAAGTGTTTCGTCGGAGTCTGTAAACATGACGGAGCTGTTACAGTGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATAAAGAAATCACATCAGTTCGCAATGGCGGTTTCATTGAGCGATGTCAAGTCGGCAGCTGGTCTAAAAAAGCTCGACGAGTATCTGCTCACTCGTAGTTACATTTCTGGGTATCAAGCTTCAAAGGATGATATCGCTGTTTACGAAGCTCTCTCCAAACCCGTTTCCAGCGAATATGTCAACGTATCTAGGTGGTGCAATCATATCGAAGCACTCTTGAGAGCCTCTGCTGGTTTTGGAGAGGGCTCTGGCGTTAAGTTTGATGCAGAAGCAATCGCAACCCCACCAGCTGCCGATGCTAAGGCTAGCGCTGATGACGATGATGACGATGATATGGATCTATTTGGCGAAGAGACTGAAGAGGAAAAGAAGGCTGCTGAGGAGCGCGCAGCTGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTCTGATGGATATCAAGCCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCTGTGAGAAGCGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTTGTCCCTGTTGGATATGGTATTAAGAAACTGCAGATAATGCTCACAATTGTTGACGACCTTGTGTCGGTTGACAATCTCATTGAGGAATATTTGACCGTTGAACCCATAAACGAGCATGTCCAGAGTTGTGATATCGTTGCCTTTAACAAAATCTAA 4452 43.71 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGTEKSMPAAENSKELCTAPTVDPGEHGPGGGPIAGVDVGEGVSSLKEDAAPAAVALTTPIAEGTSLVGDKPRSSFSSWSHYAAKQNPNFETTTPWCRLLSQFGQNSNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQREGSAVAMLESTGGKGSVMVNGLTVKKSTNCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSNKTHQGAELPSKSVVHDAMELEIDALEGNSNPEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVLEERNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFDNFPYYLSENTKNVLIAASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGINAAKSCSCSKQSMVSTETTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCNATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKSRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKCLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKASSFIMSELVVTLSLIYSITLEEERAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFIKKSHQFAMAVSLSDVKSAAGLKKLDEYLLTRSYISGYQASKDDIAVYEALSKPVSSEYVNVSRWCNHIEALLRASAGFGEGSGVKFDAEAIATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEHVQSCDIVAFNKI 1483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4219975 4240106 - Lsi02G004990.1 Lsi02g00499 655241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 316 346 - -
Lsi02g00499 1483 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 1472 1483 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lsi02g00499 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 1155 IPR027417 -
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 1346 1371 - -
Lsi02g00499 1483 Pfam EF-1 guanine nucleotide exchange domain 1396 1483 IPR014038 GO:0003746|GO:0006414
Lsi02g00499 1483 Pfam ATPase family associated with various cellular activities (AAA) 964 1093 IPR003959 GO:0005524|GO:0016887
Lsi02g00499 1483 SUPERFAMILY eEF-1beta-like 1391 1483 IPR036219 -
Lsi02g00499 1483 Gene3D - 1096 1159 - -
Lsi02g00499 1483 Coils Coil 1366 1386 - -
Lsi02g00499 1483 CDD FHA 149 232 IPR000253 GO:0005515
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 537 583 - -
Lsi02g00499 1483 SMART AAA_5 960 1097 IPR003593 -
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 1 21 - -
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 326 343 - -
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 1 76 - -
Lsi02g00499 1483 Pfam FHA domain 153 222 IPR000253 GO:0005515
Lsi02g00499 1483 ProSitePatterns AAA-protein family signature. 1067 1086 IPR003960 GO:0005524|GO:0016887
Lsi02g00499 1483 Gene3D - 131 240 - -
Lsi02g00499 1483 Pfam AAA+ lid domain 1118 1153 IPR041569 -
Lsi02g00499 1483 SMART EF1_GNE_2 1394 1483 IPR014038 GO:0003746|GO:0006414
Lsi02g00499 1483 Gene3D - 1387 1483 IPR014717 -
Lsi02g00499 1483 Gene3D - 922 1095 IPR027417 -
Lsi02g00499 1483 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 1358 1366 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 1353 1367 - -
Lsi02g00499 1483 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 283 304 - -
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 283 299 - -
Lsi02g00499 1483 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 362 - -
Lsi02g00499 1483 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 387 1251 - -
Lsi02g00499 1483 CDD AAA 962 1095 - -
Lsi02g00499 1483 CDD EF1B 1392 1483 IPR014038 GO:0003746|GO:0006414
Lsi02g00499 1483 SUPERFAMILY GST C-terminal domain-like 1226 1324 IPR036282 -
Lsi02g00499 1483 MobiDBLite consensus disorder prediction 22 36 - -
Lsi02g00499 1483 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 362 - -
Lsi02g00499 1483 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 387 1251 - -
Lsi02g00499 1483 Gene3D - 1231 1328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00499 Lsi-Chr2:4219975 Lsi02g02389 Lsi-Chr2:30563673 0 dispersed
Lsi09g00004 Lsi-Chr9:33490 Lsi02g00499 Lsi-Chr2:4219975 4.81E-10 dispersed
Lsi10g01157 Lsi-Chr10:15870482 Lsi02g00499 Lsi-Chr2:4219975 1.59E-52 dispersed
Lsi02g00499 Lsi-Chr2:4219975 Lsi05g00123 Lsi-Chr5:1904487 2.81E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00499 - - csv:101214766 2266.11