Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00510 ATGGATGCCGTAGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTTAAGAGATGTCATAAACCCGATCGCAAGGAATTCACCAAGGTTGCCGTTCGTACCGCTATCGGCTTCGTTGTGATGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTTGGATCTGGTTAG 210 47.14 MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 69
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4316239 4318699 - Lsi02G005100.1 Lsi02g00510 655252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00510 69 Gene3D Preprotein translocase SecE subunit 7 68 IPR023391 -
Lsi02g00510 69 Hamap Protein translocase subunit SecE [secE]. 9 64 IPR001901 GO:0006605|GO:0006886|GO:0016020
Lsi02g00510 69 SUPERFAMILY Preprotein translocase SecE subunit 5 65 IPR023391 -
Lsi02g00510 69 ProSitePatterns Protein secE/sec61-gamma signature. 14 42 IPR001901 GO:0006605|GO:0006886|GO:0016020
Lsi02g00510 69 Pfam SecE/Sec61-gamma subunits of protein translocation complex 13 65 IPR001901 GO:0006605|GO:0006886|GO:0016020
Lsi02g00510 69 PANTHER SEC61 GAMMA SUBUNIT 1 69 - -
Lsi02g00510 69 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 8 66 IPR008158 GO:0008320|GO:0015031|GO:0016020
Lsi02g00510 69 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3 1 69 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00510 Lsi06g01644 CCT
Lsi02g00510 Lsi06g01644 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00510 Lsi-Chr2:4316239 Lsi07g01480 Lsi-Chr7:21563778 9.76E-44 dispersed
Lsi02g00510 Lsi-Chr2:4316239 Lsi06g01644 Lsi-Chr6:26741318 4.67E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00510 K07342 - mcha:111008832 128.257