Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00513 ATGGCATCATCTGCCTCAGGATCATCAAAGAGAGCCAGAGGAACTCATAATGGTAGCACTCAGCCAGTTTCTTGTCTTGTAGATGGCTGCAATTCAGATCTAAGCAACTGTAGAGATTATCATAGGCGCCATAAAGTTTGTGAACTGCATTCAAAAACTCCTCAAGTCACAATTGCTGGCCTCAAGCAGAGATTTTGCCAGCAGTGTAGTAGGTTTCATTCACTTGAGGAATTTGACGAAGGAAAGAGAAGCTGCCGCAAACGACTCGATGGCCATAACCGGCGACGGAGAAAGCCTCAAACTGACCTCTTGCCTCGATCTGCCGGTCCTTTCCCCTATCATCAAGGTCCCCAGTTGTTGCCATTTACAAGCTCACAAGTTTTCCCCTCGACCACCGTGAGCAGCCACGGCTGGTCGTCCGGCGTCAGCGACGGCACAACAGATCCCGCCGCCCACCACAACCGGAACCCGCAACTAAATTTCCTCGAAAAACAGAGCCTCTTCGTAGAAGCATCCGACCAGAGCAGCAGCAACAACTACAAGGCCTCGCAACCATTGGGGTTCTTGCACGGCGGACCGACAACATGCCAACCCCTCCTCCGAACCATCAGTACCCTGTCAGAAAACGGCGGCGGCGGCGGCAGCGAAAGGAGCAAGATGATTTACGATAGGTTCAGAATTGGGGTTAATGAATCAGATTGTGCTCTCTCTCTTCTGTCATCACCACCGACACAGATTCAGAGTGATCATCAGCCACAGCAACAACGTAACGCCGCCATTTCTCTGCTGCATCCATTAACCCATCAAAACACTTTTGAGAATTCTGATTCTTCTTCCATTCAAATTCCAAATGACACTCATCATCATCATCATCATCATCCTCATGGTGCTCTTAATTTCCCCGGAATCTTTGGAATTTCCTCCGACAATCCTGGAAATCAATCCCCTTCTACTCTTCCTTTTCACTGGGAGTAG 975 49.23 MASSASGSSKRARGTHNGSTQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIAGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAGPFPYHQGPQLLPFTSSQVFPSTTVSSHGWSSGVSDGTTDPAAHHNRNPQLNFLEKQSLFVEASDQSSSNNYKASQPLGFLHGGPTTCQPLLRTISTLSENGGGGGSERSKMIYDRFRIGVNESDCALSLLSSPPTQIQSDHQPQQQRNAAISLLHPLTHQNTFENSDSSSIQIPNDTHHHHHHHPHGALNFPGIFGISSDNPGNQSPSTLPFHWE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4369515 4373839 - Lsi02G005130.1 Lsi02g00513 655255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00513 324 ProSiteProfiles Zinc finger SBP-type profile. 22 99 IPR004333 GO:0003677
Lsi02g00513 324 SUPERFAMILY SBT domain 23 104 IPR036893 GO:0003677|GO:0005634
Lsi02g00513 324 Pfam SBP domain 25 98 IPR004333 GO:0003677
Lsi02g00513 324 MobiDBLite consensus disorder prediction 306 324 - -
Lsi02g00513 324 Gene3D - 15 86 IPR036893 GO:0003677|GO:0005634
Lsi02g00513 324 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 324 IPR044817 GO:0003677
Lsi02g00513 324 MobiDBLite consensus disorder prediction 89 116 - -
Lsi02g00513 324 MobiDBLite consensus disorder prediction 133 155 - -
Lsi02g00513 324 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 1 324 - -
Lsi02g00513 324 MobiDBLite consensus disorder prediction 270 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00513 - - - bhj:120082600 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00513 Lsi-Chr2:4369515 Lsi07g01482 Lsi-Chr7:21593382 2.62E-42 dispersed
Lsi02g00769 Lsi-Chr2:7082863 Lsi02g00513 Lsi-Chr2:4369515 3.09E-20 dispersed
Lsi02g00513 Lsi-Chr2:4369515 Lsi06g01651 Lsi-Chr6:26789469 5.50E-91 wgd
Lsi02g00513 Lsi-Chr2:4369515 Lsi09g01730 Lsi-Chr9:25940387 4.51E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g97 . . . Bda15g00631 . . . . . . . . . . . Cpe20g00300 . Bhi02g00671 Tan09g2020 . . . . . . . . . . . . . . . . Lsi02g00513 . Chy12g01157 . . . . . . . . . . . . . . Car13g00660 . Cpe09g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011451 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24764 PF03110 SBP 6.00E-31 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00513 Lsi_Chr02 FPKM 0.228802 0.0 12.470825 14.390311 21.921999 26.208246 21.116413 10.115923 8.952741 9.709161