Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00516 ATGGCCTCCATTGCACCATTATCGCCCAATGCAAGATCATTAACAACCCATTTTCCCAAACTCCAAAAGAATTATTATTCCTTCAAATTCAACGAAAGCCACGGCGGTGCCCGTGATTTAAACTGGCGATGTAACTCCTCTATTGTGATGGCGAGCAGCCGACGCACTAGCCCACGAAATGTGGACTTGGTAAATGGGAAGAAGGTAAATGGGGTTCATGTTGTTGTTGGGGAGGCTCCGCTTTTCTCCGGCGAAAAAAGAGGGCCGTTGTTGGTGGAAGAAACCGGCATTGGTGGAGAAAAGCCACTCCATGATTGTCTTCTTGGGAGGTTTGTAGAAGACAAGTTTGTTTATGGGCAAACGTTTATTATTAGATCCTATGAAATTGGACCTGATAAAACTGCCACCATGGAAACTCTCATGAATCTTCTTCAGGAAACGGCGCTGAATCATGTGACCTGCTCGGGGCTGGCCGGAAATGACTTTGGCGCTACTCGCGAGATGAGCCTCCGGAAACTGATTTGGGTTGTTACACGTGTCCACGTCCAAGTTCAAAGATATAGTTGCTGCACCTGGGTTATAATGAACAGGGAAACAAGAAGATTGTCAAAAATACCTGATCAAGTTAGAGAAGAGTTGACTCCATTTTACCTCAATAGAATTGCCATCTCCGCGGATGAAAACGACTGTGAAAAGATCGACAAGCTCACCGATGAAACTGCCGAGAGAGTCCGATCAGGCTTAGCAAGTGTACCAATAAATGTGTTGGAAGATTTTAATCTGACGAGCATGACGCTGGAATATCGAAGAGAATGCAGGCAATCCAATCTGGTAGAGTCGTTGACAAGCACCACCGCCACCGCCACCGCCACAGCCGCCGCGGCCGCCACCATCGAAGACCCTCGCAACAACCTCCACTACACCCACCTTCTTCGTATGCAACCCAATAAGGCTGAAATTGTGAGAGCTAGAACTCAATGGAATTCCAAGCCAAAACAAAATTACTAA 1008 46.83 MASIAPLSPNARSLTTHFPKLQKNYYSFKFNESHGGARDLNWRCNSSIVMASSRRTSPRNVDLVNGKKVNGVHVVVGEAPLFSGEKRGPLLVEETGIGGEKPLHDCLLGRFVEDKFVYGQTFIIRSYEIGPDKTATMETLMNLLQETALNHVTCSGLAGNDFGATREMSLRKLIWVVTRVHVQVQRYSCCTWVIMNRETRRLSKIPDQVREELTPFYLNRIAISADENDCEKIDKLTDETAERVRSGLASVPINVLEDFNLTSMTLEYRRECRQSNLVESLTSTTATATATAAAAATIEDPRNNLHYTHLLRMQPNKAEIVRARTQWNSKPKQNY 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4424845 4431138 - Lsi02G005160.1 Lsi02g00516 655258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00516 335 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 46 190 IPR045023 GO:0006633|GO:0016297
Lsi02g00516 335 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 190 249 IPR045023 GO:0006633|GO:0016297
Lsi02g00516 335 Gene3D Hotdog Thioesterase 190 246 - -
Lsi02g00516 335 Gene3D Hotdog Thioesterase 247 334 - -
Lsi02g00516 335 Gene3D Hotdog Thioesterase 109 189 - -
Lsi02g00516 335 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 112 222 IPR029069 -
Lsi02g00516 335 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 250 327 IPR029069 -
Lsi02g00516 335 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 46 190 - -
Lsi02g00516 335 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 248 332 IPR045023 GO:0006633|GO:0016297
Lsi02g00516 335 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 190 249 - -
Lsi02g00516 335 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 248 332 - -
Lsi02g00516 335 Pfam Acyl-ACP thioesterase 250 328 IPR002864 GO:0006633|GO:0016790
Lsi02g00516 335 Pfam Acyl-ACP thioesterase 117 187 IPR002864 GO:0006633|GO:0016790
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00516 K10781 FATB; fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.21] - csv:101218502 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00516 Lsi-Chr2:4424845 Lsi09g00636 Lsi-Chr9:7043308 6.67E-49 dispersed
Lsi02g00516 Lsi-Chr2:4424845 Lsi11g00281 Lsi-Chr11:2866658 5.69E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g81 . Blo16g00278 . . . . Bma06g00270 . Cmo13g00849 . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0006 . . Lsi02g00516 Csa01g00979 . . . . . . . . . . . . . Cma13g00819 . Car13g00663 . . . . . . . . . . Cla03g00368 Cam03g0387 Cec03g0373 Cco03g0388 Clacu03g0386 Cmu03g0991 Cre03g0683 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012249 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00516 Lsi_Chr02 FPKM 7.540414 6.986854 18.221703 20.324167 7.867384 6.154571 8.434011 19.99843 20.006203 22.01889