Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00519 ATGAGTCGTAGCCTATTTTATGATCCTCATCTCGACAAATTGAAGACAAATTCAAGTAGCAAAGAGATAGATTTTAGTGGTATTTGTCTACATTCGGTCTCTCCACCCTTCACTTTTATTTCCCTCTTTCTTTTACTACCGCCTTATCAAGCTCTCAAATCCTTCCTCTCTTTAGTTGGTGTTCTCTTCACTGAAAATGTCTACGGAAAGGTCGTTCTCATCACCGGAGCTTCCTCCGGTATCGGCGAGCATTTGGCGTACGAATATGCGAAGAGAGGTGCTTGCTTAGTACTTGTAGCAAGACGACAGAATCAACTTGAAGAAGTTGCAGACATAGCTCGGGATTATGGATCACCAAGTGTAATCACCATTAGAGCAGATGTTTCCAAGTTCGAAGATTGCCGGCGAGTCATCAACGAGACAATGAATCAATTTGGGAGATTGGATCATTTGGTAAACAATGCGGCGATTACCCATTTGGTGCTGTTTGAAGACATAGCTGATATCGCTGCGTTCAGACAAGTAATGGATATAAACTACTGGGGAGCAGTGTACATAACTCATCTGGCAATTCCTTATTTGAGATATAGCAGGGGCAAGATAGTGGCTTTGTCGGCTCCGCCGGCGTGGCTACCGGCGCCGAGAATGAGCATTTACAATTCAAGCAAGGCGGCGATTAAGAGCATGTTTGAGACATTGAGAGTGGAGCTGGCGCCGGAGATTGGTGTGACGATTGTTACTCCTGGCTTCGTTGAATCTGAATTGACTCAAGGAAAAGCATTGAACGCTGTAGGCAAAGTTGAACTTCGTCAGGACATGAGGGATGCATTGATAGGGATGGTACCGGTGGAGACGGCGGAGGAATGCGCGAAGGCGGTGGTGAGAGGGGTATGCAGGGGACACAGGTACGTGACGGAGCCGTCGTGGTACAATGTGCTTTATTACTGGAAGGCGTTTTGTCCGGAGGTGGTTGAGTGGTGCTACCGGATACTGGCTATGCCGGCGCCTGGAGCTTCTGAATCCGACGCCCTGAGCAAGCAAGCCCTCGATTTAACCGGTGGCAAGTACCTCCTGTATCCTTCTTCCATTCGCTCCACCGAGCTCAAGGCCGAATAA 1116 48.03 MSRSLFYDPHLDKLKTNSSSKEIDFSGICLHSVSPPFTFISLFLLLPPYQALKSFLSLVGVLFTENVYGKVVLITGASSGIGEHLAYEYAKRGACLVLVARRQNQLEEVADIARDYGSPSVITIRADVSKFEDCRRVINETMNQFGRLDHLVNNAAITHLVLFEDIADIAAFRQVMDINYWGAVYITHLAIPYLRYSRGKIVALSAPPAWLPAPRMSIYNSSKAAIKSMFETLRVELAPEIGVTIVTPGFVESELTQGKALNAVGKVELRQDMRDALIGMVPVETAEECAKAVVRGVCRGHRYVTEPSWYNVLYYWKAFCPEVVEWCYRILAMPAPGASESDALSKQALDLTGGKYLLYPSSIRSTELKAE 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4444267 4446328 + Lsi02G005190.1 Lsi02g00519 655261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00519 371 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 206 234 IPR020904 GO:0016491
Lsi02g00519 371 Pfam short chain dehydrogenase 70 258 IPR002347 -
Lsi02g00519 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 157 IPR002347 -
Lsi02g00519 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 207 IPR002347 -
Lsi02g00519 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 238 IPR002347 -
Lsi02g00519 371 PRINTS Glucose/ribitol dehydrogenase family signature 239 256 IPR002347 -
Lsi02g00519 371 PRINTS Glucose/ribitol dehydrogenase family signature 146 157 IPR002347 -
Lsi02g00519 371 PRINTS Glucose/ribitol dehydrogenase family signature 71 88 IPR002347 -
Lsi02g00519 371 PRINTS Glucose/ribitol dehydrogenase family signature 193 209 IPR002347 -
Lsi02g00519 371 PRINTS Glucose/ribitol dehydrogenase family signature 219 238 IPR002347 -
Lsi02g00519 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 66 330 IPR036291 -
Lsi02g00519 371 PANTHER RETINOL DEHYDROGENASE-RELATED 29 363 - -
Lsi02g00519 371 Gene3D - 61 333 - -
Lsi02g00519 371 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 29 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00519 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - csv:101220450 630.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00519 Lsi-Chr2:4444267 Lsi08g00056 Lsi-Chr8:1278823 8.26E-70 dispersed
Lsi02g00518 Lsi-Chr2:4437983 Lsi02g00519 Lsi-Chr2:4444267 2.68E-170 tandem
Lsi02g00519 Lsi-Chr2:4444267 Lsi02g00520 Lsi-Chr2:4447641 1.27E-55 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g77 . . . . . . . . Cmo13g00852 Cmo18g00231 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0003 . . Lsi02g00519 Csa01g00981 Chy12g01151 Cme12g01572 . . . Bda14g01347 . Bpe15g00229 . . . . . Cma13g00821 Cma18g00304 . . Cpe09g00950 . Bhi08g01521 Tan05g2995 Cmetu12g0843 Lac10g0601 . . . Cla03g00370 Cam03g0390 Cec03g0376 Cco03g0391 Clacu03g0389 Cmu03g0994 Cre03g0686 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00519 Lsi_Chr02 FPKM 7.05907 6.404532 4.751963 4.320409 13.365549 12.76026 14.219845 3.370696 3.024454 3.554992