Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00524 ATGGGTTGCGTTCTTGGCAGACAAGCCGCCGACGCTCGCCTGGGCGCATCCGAACCTCCCAGTCGCCGCCAGACCACGGATCACCCCTCTCGTATCGACGGAGTTAATGGCGACAGAGTTAAGAAACAGACGACTTCGTTGGAAAACCAGGGAGTTCGGCAGGACGTGGATTCTTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGAGCCTTTGCCGGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCTGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGGTTTATGGCCAGAGAGATTTTGGTCCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTTGAAGGCTTAGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTATTGCATCGTGATATAAAAGGTTCCAATTTGCTAATTGATAACGAAGGAACACTGAAAATAGCTGATTTTGGGTTAGCTACTTTCTTTGATCCTGAACAGAACCAGCACATGACTAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGAACAGAGGTTGAACAACTTCATAAGATATTTAAATTATGTGGTTCTCCATCTGAGGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCAGAAACGTTCAAAGATTTTCCATCTTCTTCTCTACCTCTTATTGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTCTGAAGAGCGAATTCTTTACTACCGAGCCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGTTTTTTTTCCCCCTTCCCCTTGCTCTTGTTTTGTTTCGATCATCTAGATCAGTACCGTTGTCTTTAACAAGCAATGTACGCTTCCATTTCAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGCTGTTGATGGTGGTGGCAGGAGAGTAAGAGTACGGGATCGGGTTGGTCGGGCTGTCCCGGCTCCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAATGCAAATGGTAAGAGCAAGAGCGAAAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGACATCCCAGAGGGGCCATCTATCATTTGGGACAGCTGATACTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCTGGATCTGTTAAAAGTTCAGCAGCTCCCGGGGGACCGTCTCGGAGGAAGAAAGCGGATAAAAATAACCCCTCGATGTCTTCATCTCAAAAATTCATTCGTGCATTGAAGCCATCAATCGGGTTATCAATGGATCTGTTGTTTAGGGGTAAATAA 1794 47.6 MGCVLGRQAADARLGASEPPSRRQTTDHPSRIDGVNGDRVKKQTTSLENQGVRQDVDSFSVERRRPSPSLCRRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGTLKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALKSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRFFFPLPLALVLFRSSRSVPLSLTSNVRFHFRQRGLSGKATAVDGGGRRVRVRDRVGRAVPAPEANAEIQANLDRWRNVTNANGKSKSEKFPPPHQDGAVGYPPHETSQRGHLSFGTADTSFSSSIFSSKSGSVKSSAAPGGPSRRKKADKNNPSMSSSQKFIRALKPSIGLSMDLLFRGK 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4517223 4521322 - Lsi02G005240.1 Lsi02g00524 655266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00524 597 Gene3D Transferase(Phosphotransferase) domain 1 184 419 - -
Lsi02g00524 597 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00524 597 CDD STKc_CDK9_like 101 385 - -
Lsi02g00524 597 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 448 560 - -
Lsi02g00524 597 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Lsi02g00524 597 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00524 597 MobiDBLite consensus disorder prediction 39 56 - -
Lsi02g00524 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Lsi02g00524 597 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Lsi02g00524 597 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Lsi02g00524 597 PANTHER CELL DIVISION PROTEIN KINASE 448 560 - -
Lsi02g00524 597 PANTHER CELL DIVISION PROTEIN KINASE 59 418 - -
Lsi02g00524 597 MobiDBLite consensus disorder prediction 24 38 - -
Lsi02g00524 597 MobiDBLite consensus disorder prediction 1 71 - -
Lsi02g00524 597 MobiDBLite consensus disorder prediction 526 554 - -
Lsi02g00524 597 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 59 418 - -
Lsi02g00524 597 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00524 597 MobiDBLite consensus disorder prediction 498 580 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00524 Lsi-Chr2:4517223 Lsi05g01501 Lsi-Chr5:22835363 0 dispersed
Lsi02g00524 Lsi-Chr2:4517223 Lsi11g00478 Lsi-Chr11:5048834 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83353 PF00069 Pkinase 8.20E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00524 K08819 - csv:101205716 988.793