Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00524 | ATGGGTTGCGTTCTTGGCAGACAAGCCGCCGACGCTCGCCTGGGCGCATCCGAACCTCCCAGTCGCCGCCAGACCACGGATCACCCCTCTCGTATCGACGGAGTTAATGGCGACAGAGTTAAGAAACAGACGACTTCGTTGGAAAACCAGGGAGTTCGGCAGGACGTGGATTCTTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGAGCCTTTGCCGGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCTGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGGTTTATGGCCAGAGAGATTTTGGTCCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTTGAAGGCTTAGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTATTGCATCGTGATATAAAAGGTTCCAATTTGCTAATTGATAACGAAGGAACACTGAAAATAGCTGATTTTGGGTTAGCTACTTTCTTTGATCCTGAACAGAACCAGCACATGACTAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGAACAGAGGTTGAACAACTTCATAAGATATTTAAATTATGTGGTTCTCCATCTGAGGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCAGAAACGTTCAAAGATTTTCCATCTTCTTCTCTACCTCTTATTGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTCTGAAGAGCGAATTCTTTACTACCGAGCCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGTTTTTTTTCCCCCTTCCCCTTGCTCTTGTTTTGTTTCGATCATCTAGATCAGTACCGTTGTCTTTAACAAGCAATGTACGCTTCCATTTCAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGCTGTTGATGGTGGTGGCAGGAGAGTAAGAGTACGGGATCGGGTTGGTCGGGCTGTCCCGGCTCCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAATGCAAATGGTAAGAGCAAGAGCGAAAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGACATCCCAGAGGGGCCATCTATCATTTGGGACAGCTGATACTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCTGGATCTGTTAAAAGTTCAGCAGCTCCCGGGGGACCGTCTCGGAGGAAGAAAGCGGATAAAAATAACCCCTCGATGTCTTCATCTCAAAAATTCATTCGTGCATTGAAGCCATCAATCGGGTTATCAATGGATCTGTTGTTTAGGGGTAAATAA | 1794 | 47.6 | MGCVLGRQAADARLGASEPPSRRQTTDHPSRIDGVNGDRVKKQTTSLENQGVRQDVDSFSVERRRPSPSLCRRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGTLKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALKSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRFFFPLPLALVLFRSSRSVPLSLTSNVRFHFRQRGLSGKATAVDGGGRRVRVRDRVGRAVPAPEANAEIQANLDRWRNVTNANGKSKSEKFPPPHQDGAVGYPPHETSQRGHLSFGTADTSFSSSIFSSKSGSVKSSAAPGGPSRRKKADKNNPSMSSSQKFIRALKPSIGLSMDLLFRGK | 597 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4517223 | 4521322 | - | Lsi02G005240.1 | Lsi02g00524 | 655266 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00524 | 597 | Gene3D | Transferase(Phosphotransferase) domain 1 | 184 | 419 | - | - | |
Lsi02g00524 | 597 | ProSiteProfiles | Protein kinase domain profile. | 101 | 385 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00524 | 597 | CDD | STKc_CDK9_like | 101 | 385 | - | - | |
Lsi02g00524 | 597 | PANTHER | SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 448 | 560 | - | - | |
Lsi02g00524 | 597 | SUPERFAMILY | Protein kinase-like (PK-like) | 94 | 390 | IPR011009 | - | |
Lsi02g00524 | 597 | SMART | serkin_6 | 101 | 385 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00524 | 597 | MobiDBLite | consensus disorder prediction | 39 | 56 | - | - | |
Lsi02g00524 | 597 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 221 | 233 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi02g00524 | 597 | Gene3D | Phosphorylase Kinase; domain 1 | 88 | 183 | - | - | |
Lsi02g00524 | 597 | ProSitePatterns | Protein kinases ATP-binding region signature. | 107 | 130 | IPR017441 | GO:0005524 | |
Lsi02g00524 | 597 | PANTHER | CELL DIVISION PROTEIN KINASE | 448 | 560 | - | - | |
Lsi02g00524 | 597 | PANTHER | CELL DIVISION PROTEIN KINASE | 59 | 418 | - | - | |
Lsi02g00524 | 597 | MobiDBLite | consensus disorder prediction | 24 | 38 | - | - | |
Lsi02g00524 | 597 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
Lsi02g00524 | 597 | MobiDBLite | consensus disorder prediction | 526 | 554 | - | - | |
Lsi02g00524 | 597 | PANTHER | SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 59 | 418 | - | - | |
Lsi02g00524 | 597 | Pfam | Protein kinase domain | 101 | 385 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00524 | 597 | MobiDBLite | consensus disorder prediction | 498 | 580 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00524 | Lsi-Chr2:4517223 | Lsi05g01501 | Lsi-Chr5:22835363 | 0 | dispersed | |
Lsi02g00524 | Lsi-Chr2:4517223 | Lsi11g00478 | Lsi-Chr11:5048834 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83353 | PF00069 | Pkinase | 8.20E-68 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00524 | K08819 | - | csv:101205716 | 988.793 |