Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00525 ATGGCAGCTTTTTCATATCAATACCAACCGTTTCTTCTTGATTCCATTTTCTTGCCAAACAATCCTCTAAAAATGGGAGGCTTTTTTGATGACGGCCAAAATTTCAACAACAATTGTTTCTCTCAATTTTACCCTCAAGATCATCAACCACAACAACAACCCATTTACCATTTTCCTGACATCTCTAAACAAAGCCCTGAATCTTCCACTTTGGTCGACCGATCCGACAGCGTCGAACCGCCGGTTGGAAATCAGTTGAAACCGGCTGTTACGGTAACCGTAACTTCCCCTTGTACTAAAAAAAGGAAGAGCCGGAATAATTCTTCCGCTACCTCCGCCCAATCCAAGGGTACTACAGAGAGCACTGGGAAAAAGCAGAAAAATAAGGGGGAATTAGATGAAGGGAAAGAAAAAGATCAAAAGGCTAAAAATGGGAAGAAATTAGAGGAGAAAAAAATTTCAGAAGATGGTGGTGCAACCACTGGTTACATTCATGTCAGAGCTAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAGAGGGTGAGAAGAGAGAAAATTAGTGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGAAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGTATAACACCACAACTACCAGCGATGGCACAATGCAGCGTCGTGCCACCGCCGGCGTTGATCGACACCACCCCTCCGACGACCCCATCTCCGGCAATTTCCGCCGCAAATAATTATCCCTTAATGGACCCTTCAGCAAATTTGTTTTTACTTCAACAAGGGATAAGCGCAAATAACGCCTACTCTCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTATGTTACTTCCATTAA 1074 43.76 MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDDGQNFNNNCFSQFYPQDHQPQQQPIYHFPDISKQSPESSTLVDRSDSVEPPVGNQLKPAVTVTVTSPCTKKRKSRNNSSATSAQSKGTTESTGKKQKNKGELDEGKEKDQKAKNGKKLEEKKISEDGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPQLPAMAQCSVVPPPALIDTTPPTTPSPAISAANNYPLMDPSANLFLLQQGISANNAYSQSSQDNVKVSSWDVEDQKRKLLISSGIGDNLCYFH 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4541496 4544088 - Lsi02G005250.1 Lsi02g00525 655267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00525 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
Lsi02g00525 357 MobiDBLite consensus disorder prediction 44 75 - -
Lsi02g00525 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983
Lsi02g00525 357 MobiDBLite consensus disorder prediction 88 121 - -
Lsi02g00525 357 CDD bHLH_AtBPE_like 162 247 - -
Lsi02g00525 357 MobiDBLite consensus disorder prediction 44 162 - -
Lsi02g00525 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 357 IPR024097 GO:0006355
Lsi02g00525 357 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 357 - -
Lsi02g00525 357 SMART finulus 178 228 IPR011598 GO:0046983
Lsi02g00525 357 MobiDBLite consensus disorder prediction 122 156 - -
Lsi02g00525 357 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Lsi02g00525 357 Gene3D - 169 239 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00525 Lsi06g01672 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00525 Lsi-Chr2:4541496 Lsi02g02133 Lsi-Chr2:27636934 3.43E-43 dispersed
Lsi02g00525 Lsi-Chr2:4541496 Lsi06g01672 Lsi-Chr6:26959007 6.60E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24765 PF00010 HLH 7.00E-07 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00525 - - csv:101205943 582.793