Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00525 | ATGGCAGCTTTTTCATATCAATACCAACCGTTTCTTCTTGATTCCATTTTCTTGCCAAACAATCCTCTAAAAATGGGAGGCTTTTTTGATGACGGCCAAAATTTCAACAACAATTGTTTCTCTCAATTTTACCCTCAAGATCATCAACCACAACAACAACCCATTTACCATTTTCCTGACATCTCTAAACAAAGCCCTGAATCTTCCACTTTGGTCGACCGATCCGACAGCGTCGAACCGCCGGTTGGAAATCAGTTGAAACCGGCTGTTACGGTAACCGTAACTTCCCCTTGTACTAAAAAAAGGAAGAGCCGGAATAATTCTTCCGCTACCTCCGCCCAATCCAAGGGTACTACAGAGAGCACTGGGAAAAAGCAGAAAAATAAGGGGGAATTAGATGAAGGGAAAGAAAAAGATCAAAAGGCTAAAAATGGGAAGAAATTAGAGGAGAAAAAAATTTCAGAAGATGGTGGTGCAACCACTGGTTACATTCATGTCAGAGCTAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAGAGGGTGAGAAGAGAGAAAATTAGTGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGAAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGTATAACACCACAACTACCAGCGATGGCACAATGCAGCGTCGTGCCACCGCCGGCGTTGATCGACACCACCCCTCCGACGACCCCATCTCCGGCAATTTCCGCCGCAAATAATTATCCCTTAATGGACCCTTCAGCAAATTTGTTTTTACTTCAACAAGGGATAAGCGCAAATAACGCCTACTCTCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTATGTTACTTCCATTAA | 1074 | 43.76 | MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDDGQNFNNNCFSQFYPQDHQPQQQPIYHFPDISKQSPESSTLVDRSDSVEPPVGNQLKPAVTVTVTSPCTKKRKSRNNSSATSAQSKGTTESTGKKQKNKGELDEGKEKDQKAKNGKKLEEKKISEDGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPQLPAMAQCSVVPPPALIDTTPPTTPSPAISAANNYPLMDPSANLFLLQQGISANNAYSQSSQDNVKVSSWDVEDQKRKLLISSGIGDNLCYFH | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4541496 | 4544088 | - | Lsi02G005250.1 | Lsi02g00525 | 655267 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00525 | 357 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 172 | 222 | IPR011598 | GO:0046983 | |
Lsi02g00525 | 357 | MobiDBLite | consensus disorder prediction | 44 | 75 | - | - | |
Lsi02g00525 | 357 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 170 | 238 | IPR036638 | GO:0046983 | |
Lsi02g00525 | 357 | MobiDBLite | consensus disorder prediction | 88 | 121 | - | - | |
Lsi02g00525 | 357 | CDD | bHLH_AtBPE_like | 162 | 247 | - | - | |
Lsi02g00525 | 357 | MobiDBLite | consensus disorder prediction | 44 | 162 | - | - | |
Lsi02g00525 | 357 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 357 | IPR024097 | GO:0006355 | |
Lsi02g00525 | 357 | PANTHER | BASIC HELIX LOOP HELIX PROTEIN BHLH8 | 1 | 357 | - | - | |
Lsi02g00525 | 357 | SMART | finulus | 178 | 228 | IPR011598 | GO:0046983 | |
Lsi02g00525 | 357 | MobiDBLite | consensus disorder prediction | 122 | 156 | - | - | |
Lsi02g00525 | 357 | Pfam | Helix-loop-helix DNA-binding domain | 176 | 223 | IPR011598 | GO:0046983 | |
Lsi02g00525 | 357 | Gene3D | - | 169 | 239 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g00525 | Lsi06g01672 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00525 | Lsi-Chr2:4541496 | Lsi02g02133 | Lsi-Chr2:27636934 | 3.43E-43 | dispersed | |
Lsi02g00525 | Lsi-Chr2:4541496 | Lsi06g01672 | Lsi-Chr6:26959007 | 6.60E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24765 | PF00010 | HLH | 7.00E-07 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00525 | - | - | csv:101205943 | 582.793 |