Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00527 ATGCTTTCTAGAGTTGGGAACGTTCTTTGGATGGAAAATTGCGACGATGAAGACTCTGCTTCCTGGACTAAAAACAACAGCGACCACAACCATCTCAACCACCCTGCTAATTGCTCTGTTTTGGACAACAAAGACGAAATTACCTCTCTTTCTACCTTCAAATCCATGCTCGAGGTTGAAGACGACTGGTGTATCACTGCTAATGCCCTCCATAACCATAACCACCACACCGACATCAATGACATTACCTTCTCTCAGAATTTCACCGACCCTCCTGACAATTTGTTGCTCCCTCCTGGAGATTCCTCCTCTTCTTGTTCGCCTTCTTCCTCTGTCTTCAATAACATTGACCCATCTCAATTGCGCTTCTTTTTACCCCCAACTCGCACTTTGTCTTCACTTCATAAGGTAATTTCTAACAACCCTTTAGACCATGGCTTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTTTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAGATGAACACTCCTAATTTGTGCTTAGGCTCTCAATTGACAGCCCCAAATGTGCCCCCAATGACTGAAAATTGTTCGGGATTAGCGGGATTCCAGAGTTTCGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCTTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTTTCTAACAGGATTGAAGGGGGCATTGGAAAAAATGGAGTGGGTGATGAAAATGGAAAGAAGAGGAAAATGATTTATGCAGATGAATTGCAAGATACTAGCATCGACACATCCCATTTCAATTACGATTCTGATGATTTTACTGAGAATACTAACACTAAGTTGGATGAGAGTGGTAGGAATGTTGGAAATACATCTAATGCCAATAGTACGGTGACCGGCGGCGACCAGAAGGGAAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCCAAAATCAGCAAAATGGATCGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAATTAGAGTTTGCCCCTTCTGGGGCAGCCTTGACGCCGGGCGCAAGCTTCCACCCCCTGACTCCAACTCCGCCAAGCCTATCAAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGTCCAAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGACGGGCAGTAAATATACACATGTTTTGTGGCCGTCGACCGGGTCTCTTGCTCTCCACAGTTCGGGCATTAGATAATCTTGGATTGGACATCCAACAAGCTGTGATTAGCTGCTTTAATGGTTTTGCCATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGGTCAAGATGTCCATCCTGAGCAGATAAAAGCAATATTATTGGATTCAGTTGGTTTCAATGGTGCGACATAG 1653 45.74 MLSRVGNVLWMENCDDEDSASWTKNNSDHNHLNHPANCSVLDNKDEITSLSTFKSMLEVEDDWCITANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPPTRTLSSLHKVISNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPTSQMNTPNLCLGSQLTAPNVPPMTENCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSNLGVLSPDGGWFSNRIEGGIGKNGVGDENGKKRKMIYADELQDTSIDTSHFNYDSDDFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPSGAALTPGASFHPLTPTPPSLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGAT 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4582571 4585923 + Lsi02G005270.1 Lsi02g00527 655269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00527 550 CDD bHLH_AtAMS_like 362 426 - -
Lsi02g00527 550 CDD ACT_UUR-ACR-like 479 539 - -
Lsi02g00527 550 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983
Lsi02g00527 550 MobiDBLite consensus disorder prediction 323 359 - -
Lsi02g00527 550 Coils Coil 398 418 - -
Lsi02g00527 550 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 101 548 - -
Lsi02g00527 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 425 IPR036638 GO:0046983
Lsi02g00527 550 MobiDBLite consensus disorder prediction 323 352 - -
Lsi02g00527 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983
Lsi02g00527 550 PANTHER BHLH TRANSCRIPTIONAL FACTOR 101 548 - -
Lsi02g00527 550 SMART finulus 365 414 IPR011598 GO:0046983
Lsi02g00527 550 Gene3D - 353 422 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00527 Lsi-Chr2:4582571 Lsi05g00449 Lsi-Chr5:5739400 3.21E-162 dispersed
Lsi03g01325 Lsi-Chr3:24065296 Lsi02g00527 Lsi-Chr2:4582571 5.99E-14 dispersed
Lsi10g01587 Lsi-Chr10:20356765 Lsi02g00527 Lsi-Chr2:4582571 6.03E-10 dispersed
Lsi02g00527 Lsi-Chr2:4582571 Lsi01g00831 Lsi-Chr1:6593034 4.84E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24766 PF00010 HLH 2.10E-09 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00527 - - csv:101206422 979.548