Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00534 ATGTGCTTACGAGAAAAAAAGAAAAAAGAAAAAAGAAAAATGAAATGGGGTGTTCTTCTTCTCGTCGTTCTGGCCTCCGCCGCCGTGTCGTGGGCCCATAAAGATTTCGAGGATGACGGAGATGAATACTCGAGCCTTGAGATTCCGCAGTTGCAGGAGTTTTCAGCTTTTGGGGACTTTCTTTCTTATGGGTTCTACCAGAAAAGTTGTCCCGGCGTCGATGGCATCATTCACCGTAAACTCAAGCAGTGGTTTGATAAAGATAACACCATCGCCGCCAGCCTCTTGAGATTGCACTTCCATGACTGCGTCGTCAGGGGCTGTGATGGTTCTATTCTTCTAGATTACGAGGGAAGCGAGAGGAGGGCTCCAGCGAGCAAGACGCTTAGAGGTTTCGAAGTGATCGACGATATCAAAGCCGAGTTAGAGAAACAGTGCCCTAAAACAGTTTCTTGCGCAGATATTCTAACTGCCGTCGCCAGAGAAGCCACCGTCCTCATCGGCGGTCCATATTGGATGGTACCTTATGGAAGAAGAGATGGAATGGATTCCATTGCCAAAGAAACTGAATTAGTGCCATTGGGTATTGAAGATATCACTTCTCTCATTGAACTATACCAATCTCTTGGCTTGAATGTCCTAGATTTGGTCGTTCTTTCGGGGGCACACACGATTGGAAGGGCAACATGCGGATCAATACAAAACAGGCTTTACAATTACAGCGCAACGGGAAAACCAGACCCATCAATAAGCCCAAAATACTTAAACTTCTTGAGAAGAAAATGCCGATGGGCCTCAGACTACGTGGACCTTGACGCCACAACGCCCAAGGCATTCGACAACGCCTACTACTCTAATCTCCCAAAAAAGATGGGTCTTTTATCCTCTGATTCGGCTCTCTACACCGATCCAAGAACTTCCCCCATCGTCAAAGCTTTGGCCTATCAGCCCTCCATTTTCCGCCACCAGTTTGCTGTCTCCATGGCTAAGCTTGGAAACGTTCAAGTTCTTACTGACCTTTTCGAAGGCCAGATTCGAACCAATTGCATGTCAACTAGTGTTGTTGGTTATAGTTCCAATAATTGTAGCTCTACTGAGAGGGACGCACTGATTGCCTTCAAACAAGGCTTATCAGATCCTTCAGCTCGGCTTTCTTCTTGGGTGGGTGATAATTGTTGTCAGTGGCATGGCGTAACTTGTAATCTCATTTCCGGAAAAGTCACCAAAATCGATCTACACAACTCATGGGGCTCTACCATTTCTCCATTTATTATGAAGTATGGAGATGATGACAGACCATGGATAGATCCCGACGATTTTTTACAAGAGTTCCAGAAGACTTGTTTGGGAGGGAAAATAAGTTCTTCTCTACTTGAGCTCAAATATTTGAACCATCTCGACTTAAGTCTCGATAATTTTGAAGGTGCTCCAATTCCATATTTCTTTGGGATGCTTAAAAACTTAAGGTACCTCAATCTTCATTCTGCGAATTTTAGTGGACAAATTCCCATTCACCTAGGAAATTTGTCTAATTTGAATTATCTAGATCTTTCTGGTAGTGAACTAGGATTATTCGAGTCTGTTGGAAACTTGCAATGGCTTTCTGAGCTACACTTGAGTTACTGTGGTATTTCAAGTTTTGATACTTCAACTGCTTTTCTAAATCTCTCTTCACTCAGAGTTCTTGATTTATCAGTTAATGGGATAAATTCTTCCATGCCTTCGTGGCTATCTAATCTTACTACCGTTTCAACACTTGATCTGAGTTATAATTCTTTTCAAGGTACAATTCCTCATGATTTTGTGAAATTGAAAAATCTCCAATATCTTAACTTAAGCAGTAATAGTTTCAGTAATAATATTGGAGATCACCCACCAAGATTTCAGGAAAATCTTTGCAAGTTACGATTTTTGGAACTTTCAAGCAATAGTTTTCAGATACCAAGTTTATTGGGAACATTTAAGAACCTACGATGGTTGGATCTTTCCTCTAATCAATTGTGGGGTTCACTTCCAAATTCAATAGGTAATTTGTCATTGTTGCAACATTTGTCTATCTCAAGTAACTCCTTAAATGGAACTATACCTTCAAGTTTTGGACAACTTTCAAATCTTGTTAATTTTGAGAGTTACAGGAATTCATGGAACACAGTTATAACAGAGGTTCATCTAGTGAATTTGACGAAGTTGGAAATCTTTAAAGTCAAGACAAATAGTACACAACCTTTGGTTTTTAACATTTCACGTGATTGGATTCCTCCTTTCAAGCTCAAGAATCTTTATTTGATAAATTGTCTCATTGGCCCTCAATTTCCCGATTGGCTTCGAACTCAAACTCAACTAATTGAGATCACCCTCTCTAACGTTAGAATTTCTGGTTCTGTACCAAATGACTGGATTTCTAACATATCTTCTCAAGTCACTAAATTGGATTTGTCCAACAACTTGCTCAATGTAAACCTATCCTACCTATTAACATCTGATCAAAAGAATTCTATTGGTGGAAGTCAAAACCTCCTTAATGAATCAATCCCCCTCAGGTATCCTAATCTAAGATTCTTGAATCTACGAAACAATAAGTGGTAA 2586 40.45 MCLREKKKKEKRKMKWGVLLLVVLASAAVSWAHKDFEDDGDEYSSLEIPQLQEFSAFGDFLSYGFYQKSCPGVDGIIHRKLKQWFDKDNTIAASLLRLHFHDCVVRGCDGSILLDYEGSERRAPASKTLRGFEVIDDIKAELEKQCPKTVSCADILTAVAREATVLIGGPYWMVPYGRRDGMDSIAKETELVPLGIEDITSLIELYQSLGLNVLDLVVLSGAHTIGRATCGSIQNRLYNYSATGKPDPSISPKYLNFLRRKCRWASDYVDLDATTPKAFDNAYYSNLPKKMGLLSSDSALYTDPRTSPIVKALAYQPSIFRHQFAVSMAKLGNVQVLTDLFEGQIRTNCMSTSVVGYSSNNCSSTERDALIAFKQGLSDPSARLSSWVGDNCCQWHGVTCNLISGKVTKIDLHNSWGSTISPFIMKYGDDDRPWIDPDDFLQEFQKTCLGGKISSSLLELKYLNHLDLSLDNFEGAPIPYFFGMLKNLRYLNLHSANFSGQIPIHLGNLSNLNYLDLSGSELGLFESVGNLQWLSELHLSYCGISSFDTSTAFLNLSSLRVLDLSVNGINSSMPSWLSNLTTVSTLDLSYNSFQGTIPHDFVKLKNLQYLNLSSNSFSNNIGDHPPRFQENLCKLRFLELSSNSFQIPSLLGTFKNLRWLDLSSNQLWGSLPNSIGNLSLLQHLSISSNSLNGTIPSSFGQLSNLVNFESYRNSWNTVITEVHLVNLTKLEIFKVKTNSTQPLVFNISRDWIPPFKLKNLYLINCLIGPQFPDWLRTQTQLIEITLSNVRISGSVPNDWISNISSQVTKLDLSNNLLNVNLSYLLTSDQKNSIGGSQNLLNESIPLRYPNLRFLNLRNNKW 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4638067 4651370 + Lsi02G005340.1 Lsi02g00534 655276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00534 861 SMART LRR_typ_2 678 702 IPR003591 -
Lsi02g00534 861 SMART LRR_typ_2 604 624 IPR003591 -
Lsi02g00534 861 SMART LRR_typ_2 556 580 IPR003591 -
Lsi02g00534 861 SMART LRR_typ_2 531 555 IPR003591 -
Lsi02g00534 861 SMART LRR_typ_2 654 677 IPR003591 -
Lsi02g00534 861 ProSiteProfiles Plant heme peroxidase family profile. 60 353 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 SUPERFAMILY RNI-like 461 731 - -
Lsi02g00534 861 SUPERFAMILY L domain-like 721 859 - -
Lsi02g00534 861 PANTHER PEROXIDASE 25-RELATED 52 352 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 Gene3D Ribonuclease Inhibitor 716 838 IPR032675 -
Lsi02g00534 861 Gene3D Peroxidase, domain 2 193 331 - -
Lsi02g00534 861 Pfam Leucine Rich Repeat 656 678 IPR001611 GO:0005515
Lsi02g00534 861 Pfam Leucine Rich Repeat 681 701 IPR001611 GO:0005515
Lsi02g00534 861 Pfam Leucine rich repeat 568 616 IPR001611 GO:0005515
Lsi02g00534 861 SUPERFAMILY Heme-dependent peroxidases 61 350 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PANTHER PEROXIDASE 52 352 - -
Lsi02g00534 861 Pfam Leucine rich repeat N-terminal domain 364 401 IPR013210 -
Lsi02g00534 861 ProSitePatterns Peroxidases active site signature. 92 103 IPR019794 GO:0004601
Lsi02g00534 861 Pfam Peroxidase 79 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Haem peroxidase superfamily signature 168 180 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Haem peroxidase superfamily signature 215 230 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Haem peroxidase superfamily signature 272 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Haem peroxidase superfamily signature 92 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Haem peroxidase superfamily signature 150 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 CDD secretory_peroxidase 61 349 IPR033905 GO:0004601|GO:0042744
Lsi02g00534 861 ProSiteProfiles Leucine-rich repeat profile. 656 678 IPR001611 GO:0005515
Lsi02g00534 861 Gene3D Ribonuclease Inhibitor 362 548 IPR032675 -
Lsi02g00534 861 ProSitePatterns Peroxidases proximal heme-ligand signature. 215 225 IPR019793 -
Lsi02g00534 861 PRINTS Plant peroxidase signature 286 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Plant peroxidase signature 94 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Plant peroxidase signature 130 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Plant peroxidase signature 214 226 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Plant peroxidase signature 149 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Plant peroxidase signature 70 89 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Plant peroxidase signature 326 339 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Plant peroxidase signature 270 285 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 PRINTS Plant peroxidase signature 168 183 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00534 861 Gene3D Ribonuclease Inhibitor 599 648 IPR032675 -
Lsi02g00534 861 Gene3D Ribonuclease Inhibitor 549 598 IPR032675 -
Lsi02g00534 861 Gene3D Ribonuclease Inhibitor 649 710 IPR032675 -
Lsi02g00534 861 Gene3D - 64 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00534 Lsi-Chr2:4638067 Lsi03g01701 Lsi-Chr3:28343496 7.88E-10 dispersed
Lsi02g00534 Lsi-Chr2:4638067 Lsi11g01469 Lsi-Chr11:23252468 1.18E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00534 K00430 - csv:101218786 639.802