Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00542 ATGCTTAGGGTTTGGGTAATGGCTCCGACAGAGGTGATAACGCTGTATCTACAATTTCTTCTGCTTTTCATGTTAATTTGGGTGTCCAGAATGGGCGGCTCGGACACTATGTTCAACGATTCAGTAAGTGGGCATTCGGTTGTTTCCAGAAATGAAAATCCAAAAGGACGGTGCCCACATGGTTGGATTATTAGCCCAAACAAGACTAAGTGCTATGGTTTCATGTCGAGCCCTAAATCATGGAATGATTCAGAGACCCAATGTAATGGTTTTGGTGGGAACTTAGCAGCTCTGATAACATATCAAGAGTTTAGCTTTGTACAAAATCTGTGTAATGGAATTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCGTTCAACTCTTCGAATCATTTTGTTTGGGAATGGTCAGATAATGTTTCGAAATGGAATGATTCCATTATTCCCAGAACAACTTTGCAATCCAACTGCAAAAATGTCTCTTGCCGCGTGAATGATTCGGTTGAAACATGTACTTTAATATTTGGTGGACCAGCAACACCGTTCCTTGGGGATGAGAAATGCAACAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGCGGGTTGATATTTTGCACGACGTTAGCTGTGGTGATTTGGCTTCTTGCCCACAAGAGGAGCAAGAAACGGAGAAGGTCGCGAAAGCCATCCAACCCTGCAGCTTCTGCACTGGTACCGCCTTCATGGAAGGTGTTTACCAAAGAAGAGCTAAGATCAATTACAAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGACACAAAAACAGGTGGTACATACAGTGGACTTTTACCTGATGGTTCAAGAGTTGCGATAAAAAGGTTAAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTCCATTCTGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTACCAAGAGGTGGTCGAAGCTTAGATTGGACTATGAGAATAAAAATTGCCACAACTCTTGCCCAAGGGATTGCGTTCCTTCACGACAAGGTCAAGCCACACGTGGTACATCGTGATATCCGTGCGAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTGGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATATCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACCACGAAGAGTGATGTCTATAGTTTTGGGGTGCTACTGCTTGAAATTGTGACCGGTCGAAGGCCCGCACAGGCAGTTGATTCGGTTGGTTGGCAGAGCATTTTCGAATGGGCAACACCCCTCGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACGGCCACTTCTACTTCTGAAATTCCAGAGGCTGGTGTTGTCCAGAAGGTCGTGGACCTTGTGTATGCTTGCACACAGCATGTCCCGTCCATGCGCCCTAGAATGTCGCACGTTGTTCATCAGCTGCAACAATTGGCTCCCTCACCTCTCACTATGAAGTAA 1701 44.86 MLRVWVMAPTEVITLYLQFLLLFMLIWVSRMGGSDTMFNDSVSGHSVVSRNENPKGRCPHGWIISPNKTKCYGFMSSPKSWNDSETQCNGFGGNLAALITYQEFSFVQNLCNGILGGCWVGGRAFNSSNHFVWEWSDNVSKWNDSIIPRTTLQSNCKNVSCRVNDSVETCTLIFGGPATPFLGDEKCNSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRSLDWTMRIKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTMK 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4701911 4706056 + Lsi02G005420.1 Lsi02g00542 655284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00542 566 SMART CLECT_2 58 196 IPR001304 -
Lsi02g00542 566 PANTHER - 15 559 - -
Lsi02g00542 566 Pfam Protein tyrosine and serine/threonine kinase 284 555 IPR001245 GO:0004672|GO:0006468
Lsi02g00542 566 ProSitePatterns Tyrosine protein kinases specific active-site signature. 400 412 IPR008266 GO:0004672|GO:0006468
Lsi02g00542 566 Gene3D - 41 199 IPR016186 -
Lsi02g00542 566 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 559 - -
Lsi02g00542 566 Pfam Lectin C-type domain 78 196 IPR001304 -
Lsi02g00542 566 Gene3D Phosphorylase Kinase; domain 1 255 353 - -
Lsi02g00542 566 Gene3D Transferase(Phosphotransferase) domain 1 354 560 - -
Lsi02g00542 566 SUPERFAMILY C-type lectin-like 47 199 IPR016187 -
Lsi02g00542 566 ProSiteProfiles C-type lectin domain profile. 67 196 IPR001304 -
Lsi02g00542 566 SMART tyrkin_6 281 555 IPR020635 GO:0004713|GO:0006468
Lsi02g00542 566 SUPERFAMILY Protein kinase-like (PK-like) 251 555 IPR011009 -
Lsi02g00542 566 ProSiteProfiles Protein kinase domain profile. 278 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00542 Lsi-Chr2:4701911 Lsi11g01653 Lsi-Chr11:24830084 3.50E-61 dispersed
Lsi02g00542 Lsi-Chr2:4701911 Lsi06g00871 Lsi-Chr6:18218127 6.75E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83355 PF07714 PK_Tyr_Ser-Thr 4.20E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00542 - - csv:101218425 1055.82