Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00548 ATGGCGTCAAGATTCAAGAATGGTGAGGATACTGACGATAAAGATAGTAGTATCTGGGTTTTGGATCACCAGATGGACCAGCCAATGGATGAAGAAGCTAGGCGGCTAAAGAATGCGCATCAGGAAAAGGGTCATTCTGTATTTAAAATTCTACAACTTGCATTCCAAAGCCTTGGAATAGTGTACGGAGATTTGGGCACTTCCCCTTTGTATGTCTTCTATAACACGTTCCCCGATGGAGTTGAAAATACAGAGGACTTGATAGGAGCTCTGTCGTTGATTATATACTCTCTGACTCTCATAACGCTTATCAAGTACGTATTTATTGTCTGCAAGGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTATATTCATTGCTAAGCCGTCATGCTAAAATATTAACTATCCCTAACCATGACCTCAGTGATGAGAAGCTTACGACTTATAGTCGTTCTGAGTACCGGGAACAATCATTTGCTGCAAAAACTAAGAGATGGCTGGAAGGGCATCATTTTAAGAAACACGCAATTCTTGTTCTCGTTCTTGTTGGCTCTTGCATGGTGATTGGGGATGGAATTCTAACGCCTGCTATTTCAGTGCTTTCTGCTGTTGGGGGGATCAACGTTGGTCGTGTAAAAATAAGCAGTGATGTCGCTGTTCTTGTTGCTATTGTCATACTTATTGTCTTGTTTAGCATGCAACGTTATGGCACAGATAAAGTTGGTTGGCTGTTTGCCCCGGTAGTTTTTCTGTGGTTCATCTTAATAGGAGGCATCGGTATATTTAACATCTGCAAATATGATCACAGTGCCCTGAGGGCCTTTTCTCCAGTATATATATACCGGTACTTCAAAAGGGGAGGGAAAGCTGGATGGACATCCCTTGGAGGGATCATGCTTAGTATTACAGGAACTGAAGCACTTTTTGCAGACCTATCCCATTTTCCAGTTTCCTCCATACAAATTGCTTTTACAGTAGTTGTATTTCCGTCCCTTCTTTTAGCCTACACTGGACAAGTTGCCTATCTCATGAAAAACCCAGATTATGTTGTCGGTGCCTTCTACCATTCAATCCCAGAAAGTATATATTGGCCAGTATTTCTTGTTGCAACTACCGCGGCTGTCGTTGCAAGCCAAGCCACCATTTCTGCAACCTTTTCATTAGTCAAGCAAGCCCTTGCACTTGGTTGCTTTCCAAGAGTTAAAGTTGTTCATACTTCTACAATGTTCCGTAATCAGATATATATTCCTGATATTAATTGGATCCTAATGGTCCTTTGCATTTCCGTGACAGCTGGGTTCAAAAATCAAAGCCAAATTGGAAATGCTTCTGGTAAGGACAGCAGTGATTATAGTGATGTTGGTAACCACATTCCTCATGACTTTAATAATGATATTAGTGTGGCACTCCCACTGGACTCTAGTTCTGCTCTTCACTTGCTTATCACTGATTGTGGAGGGTTTCTACCTCTCCTCAGTTATACAGAAGTTAAACGTTATGAAATTGAGATGCACACTAAGGTTTCAATGGCATGGATTCTTAGCCTTGGCCCCAGTTTAGGACTTGTAAGGGTGCCTGGGATAGGACTTGTGTACACAGAACTAGCAAGTGGAGTCCCCCACATCTTTTCACACTTCGTCACAAACTTACCCGCCATTCATTCTGTTGTGGTTTTTGTGTGTTTGAAGTGTTTGCCTGTCCACACAGTCCCAGAAGAAGAGAGATTTCTGGTAAAACGGATTGGACCTAAGAATTTTCGCATGTTTCGGTGTGTAGCTAGATATGGTTACAAAGATCTTCACAAGAAAGATGATGATTTTGAGAAGAAACTCTTTGATAGCCTCTTCTTATTTGTTCGACTCGAGTCGTTGATGGATGGTGGATCTTCAGATTCGGACGTGTCTAGTCTACTTGATCAACAAACCGAAACAATTACTGAATTTCCATTGAGCGCCATTAATTCAACTTGCACATCTGTGGAATCAACAGGACTACAAACGGCAGATTCAATTGAGCTTGCCAATTCTTCATTGCATCAGCACCAAGCCATCATAACACCCAGTCAAGACAATGATCAGACTGAGACAGATGAGTTAGAATTCTTGGTTAGCTGTAAGAATGTTGGAGTTGTACACATTCTTGGAAATACAGTAATGAAAGCTAGGAGGGATTCCAGATTCTGCAAAAGGATAGCGATTGATTATATATATGCATTTCTTAGGAAGATCTGCAGGGAGAACAGCGTGATGTTCAATGTTCCTCATGAGAGTTTGCTTAATGTTGGCCAAACATTCTATGTATGA 2307 41.4 MASRFKNGEDTDDKDSSIWVLDHQMDQPMDEEARRLKNAHQEKGHSVFKILQLAFQSLGIVYGDLGTSPLYVFYNTFPDGVENTEDLIGALSLIIYSLTLITLIKYVFIVCKANDNGQGGTFALYSLLSRHAKILTIPNHDLSDEKLTTYSRSEYREQSFAAKTKRWLEGHHFKKHAILVLVLVGSCMVIGDGILTPAISVLSAVGGINVGRVKISSDVAVLVAIVILIVLFSMQRYGTDKVGWLFAPVVFLWFILIGGIGIFNICKYDHSALRAFSPVYIYRYFKRGGKAGWTSLGGIMLSITGTEALFADLSHFPVSSIQIAFTVVVFPSLLLAYTGQVAYLMKNPDYVVGAFYHSIPESIYWPVFLVATTAAVVASQATISATFSLVKQALALGCFPRVKVVHTSTMFRNQIYIPDINWILMVLCISVTAGFKNQSQIGNASGKDSSDYSDVGNHIPHDFNNDISVALPLDSSSALHLLITDCGGFLPLLSYTEVKRYEIEMHTKVSMAWILSLGPSLGLVRVPGIGLVYTELASGVPHIFSHFVTNLPAIHSVVVFVCLKCLPVHTVPEEERFLVKRIGPKNFRMFRCVARYGYKDLHKKDDDFEKKLFDSLFLFVRLESLMDGGSSDSDVSSLLDQQTETITEFPLSAINSTCTSVESTGLQTADSIELANSSLHQHQAIITPSQDNDQTETDELEFLVSCKNVGVVHILGNTVMKARRDSRFCKRIAIDYIYAFLRKICRENSVMFNVPHESLLNVGQTFYV 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4800274 4805756 - Lsi02G005480.1 Lsi02g00548 655290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00548 768 PANTHER POTASSIUM TRANSPORTER 493 767 - -
Lsi02g00548 768 PANTHER POTASSIUM TRANSPORTER 2 447 - -
Lsi02g00548 768 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 2 447 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi02g00548 768 Pfam K+ potassium transporter 54 446 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi02g00548 768 Pfam K+ potassium transporter 494 600 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi02g00548 768 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 493 767 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00548 Lsi-Chr2:4800274 Lsi03g01412 Lsi-Chr3:25070978 0 dispersed
Lsi02g00548 Lsi-Chr2:4800274 Lsi02g00549 Lsi-Chr2:4809632 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00548 K03549 - csv:101217671 1199.11