Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00573 ATGGATCATTTTGGTGCATATATATCGCCAGCCCACCCTCTCTCTGTTAAGAGTCCCTCTGGTTTGTATACTTTGTCCGAGCTGACATGCAAGAGAACTCATACTACCATGGCCTCAAAATCCACCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAATTCCTCCCTCCAAGATTACTACACTCCCAGCAAGAAGAATATGAACATAATCGACTCTTGCTGGCGTCAAACATCCAATTGGGCCAAAAACCGCCAAGCCTTAGCCAACTGCGCGGTTGGCTATGGCAAGGACGCAATCGGAGGCAAATTTGGCTCCATTTACGTGGTGACCGACCCATCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAGAGAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTAATGGTAAATAGTTACAAGACGATTGATGGACGTGGGGCTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTGCAAGGAGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGCAAAGCTGGGGTTGTTAGAGATAGTGTGTCGCATGTTGGAAAACGGCAAGGATCTGATGGTGATGCTATTGCTGTGTTTGGTTCTTCACATGTTTGGATTGATCATTGTTTTTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTGCTTGGACATAATGATGGGTTCACTGATGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTTGGTGCTGGCCTTATTGAGAGAATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGACGAATGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCACAAAATTCTAATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCTAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCGGGATGGGGAAGTTGCAGCCCAATTTACACAAAACCTCAGTCTTTTCCAGTGGCTCCTGGCTCCATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCCTGTTTTATCGGCAAATCTTGCTAA 1254 43.62 MDHFGAYISPAHPLSVKSPSGLYTLSELTCKRTHTTMASKSTHLLLILLFILSFINSSLQDYYTPSKKNMNIIDSCWRQTSNWAKNRQALANCAVGYGKDAIGGKFGSIYVVTDPSDNPSNPKYGTLRYGVIQEKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKAGVVRDSVSHVGKRQGSDGDAIAVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPQNSNAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCSPIYTKPQSFPVAPGSMVPALTENAGPLPCFIGKSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5129704 5137554 + Lsi02G005730.1 Lsi02g00573 655315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00573 417 SMART amb_all 144 341 IPR002022 -
Lsi02g00573 417 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Lsi02g00573 417 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Lsi02g00573 417 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Lsi02g00573 417 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
Lsi02g00573 417 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Lsi02g00573 417 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Lsi02g00573 417 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Lsi02g00573 417 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lsi02g00573 417 PANTHER PECTATE LYASE 18-RELATED 55 415 IPR045032 GO:0030570
Lsi02g00573 417 SUPERFAMILY Pectin lyase-like 70 408 IPR011050 -
Lsi02g00573 417 PANTHER PECTATE LYASE 16-RELATED 55 415 - -
Lsi02g00573 417 Pfam Pectate lyase 150 335 IPR002022 -
Lsi02g00573 417 Gene3D - 70 410 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00573 Lsi-Chr2:5129704 Lsi02g00456 Lsi-Chr2:3822873 2.76E-148 dispersed
Lsi02g00043 Lsi-Chr2:427990 Lsi02g00573 Lsi-Chr2:5129704 8.17E-107 transposed
Lsi01g00449 Lsi-Chr1:3750366 Lsi02g00573 Lsi-Chr2:5129704 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00573 K01728 - csv:101211379 737.643