Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00599 ATGTCTTGTTCAAATCTGACTATGTGGGTATCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTTTCTTTCCGCTCATTTTTGAGCCCTTTCCAGCTTCCTTCCCAGAATTCAAGCTCTACCTATCCTGGCCGATCATGCTCAGTTTCTCCAATCCATTGCGGTCTCCGGGAGCTTCGAGACCGTATTGATTCAGTGAAGAACACTCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCAGAAGCCTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTTGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGATCGAGGTCTTTGTGGTGGTTTCAACAACACTATCATTAAGAAAGCTGAAGCTAGAATATCAGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGTGTTGGGAAGAAGGGTAACACTTATTTCCTTCGCCGGCCTTACATCCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTTGAGCTTTTATACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTAATTCACACTCTTCTTCCTCTCTCACCCAAGGGTGAGATCTGTGATATAAATGGAATCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACCAAGGAAGGGAAATTGACAGTGGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCACCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCACTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTAGAATGAGTGCTATGAGTAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAACAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1131 42.62 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNTIIKKAEARISELKALGLDYTVISVGKKGNTYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGICVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5327090 5328220 - Lsi02G005990.1 Lsi02g00599 655341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00599 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Lsi02g00599 376 Gene3D - 123 246 - -
Lsi02g00599 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
Lsi02g00599 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 375 - -
Lsi02g00599 376 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 55 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 375 - -
Lsi02g00599 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi02g00599 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00596 Lsi-Chr5:7388893 Lsi02g00599 Lsi-Chr2:5327090 2.18E-152 transposed
Lsi01g00426 Lsi-Chr1:3608956 Lsi02g00599 Lsi-Chr2:5327090 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00599 K02115 - csv:101214408 669.077