Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00601 ATGGGTTCCAAAACACTGTTTTTCTTCATCTTCCTTTCCTTTTTGGCTGCTTCTTTCAGCTATGCTTCTGCACAGGTTGAGGAAGACAATGGTCTTGTTATGAACTTTTACAAAGATACATGTCCTCAAGCTGAAGATATCATCAAAGAACAAGTTAGGCTTCTCTACAAGCGCCACAAGAACACTGCATTCTCTTGGCTCAGAAACATCTTCCATGACTGTGCTGTTCAATCCTGTGATGCATCTCTGCTGCTGGATTCAACAAGAAGGACCCTGTCTGAGAAGGAAACAGACAGAAGCTTTGGACTTAGGAATTTCAGGTATATTGAGACCATTAAAGAGGCACTGGAAAGGGAGTGCCCTGGAGTTGTGTCCTGTGCTGATATCCTTGTTTTGTCTGCAAGAGAAGGCATTGTTTCTCTTGGAGGGCCTTACATCCCACTTAAAACAGGCAGAAGAGATGGAAGAAGAAGCAGAGCTGAAATTTTGGAAGAGTATCTTCCAGACCACAATGAAAGCATGTCTGTTGTCCTTGAAAGATTTGCAGCCATGGGTATTGACACCCCTGGAGTGGTTGCTTTACTAGGAGCTCATAGTGTTGGTAGAACACACTGTGTGAAGCTGGTGCACCGGCTCTACCCACAGGTAGACCCTGTGCTGAACCCTGACCATGTAGAGCACATGTTGTACAAGTGTCCTGATGAGATCCCAGATCCCAAGGCTGTTCAGTACGTGAGGAATGACCGTGGCACACCTATGATTCTGGACAACAACTACTACAGAAACATACTTGATAACAAAGGGTTGCTGATAGTAGATCACCAACTAGCTACAGACAAGAGAACAAAGCCATATGTGAAGAAAATGGCCAAAAAGCAAGACTATTTCTTCAAGGAGTTCTCAAGAGCCATTACCATCCTTTCTGAGAACAACCCTCTCACTGGCACAAAGGGTGAGATCAGGAAGCAGTGCAATGTTGCCAACAAGCTGCACTAA 996 44.68 MGSKTLFFFIFLSFLAASFSYASAQVEEDNGLVMNFYKDTCPQAEDIIKEQVRLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRTLSEKETDRSFGLRNFRYIETIKEALERECPGVVSCADILVLSAREGIVSLGGPYIPLKTGRRDGRRSRAEILEEYLPDHNESMSVVLERFAAMGIDTPGVVALLGAHSVGRTHCVKLVHRLYPQVDPVLNPDHVEHMLYKCPDEIPDPKAVQYVRNDRGTPMILDNNYYRNILDNKGLLIVDHQLATDKRTKPYVKKMAKKQDYFFKEFSRAITILSENNPLTGTKGEIRKQCNVANKLH 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5340336 5342654 + Lsi02G006010.1 Lsi02g00601 655343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00601 331 PANTHER PEROXIDASE 25-RELATED 23 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 Gene3D - 35 328 - -
Lsi02g00601 331 Pfam Peroxidase 49 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 ProSiteProfiles Plant heme peroxidase family profile. 31 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 SUPERFAMILY Heme-dependent peroxidases 32 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 Gene3D Peroxidase, domain 2 168 307 - -
Lsi02g00601 331 CDD secretory_peroxidase 31 326 IPR033905 GO:0004601|GO:0042744
Lsi02g00601 331 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PANTHER PEROXIDASE 42 23 327 - -
Lsi02g00601 331 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00601 331 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00601 Lsi-Chr2:5340336 Lsi11g01605 Lsi-Chr11:24387031 5.82E-63 dispersed
Lsi03g02038 Lsi-Chr3:31740276 Lsi02g00601 Lsi-Chr2:5340336 1.97E-35 dispersed
Lsi02g00601 Lsi-Chr2:5340336 Lsi01g01358 Lsi-Chr1:11762761 8.55E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00601 K00430 - csv:101214168 622.854