Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00624 ATGTTTGGAGCACATGGTTTTGAAGATGCTCATGAGGATCTACTACTGGAGATGACACAAAAAAACTTTGAAACTGAACTGGAGAAATTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTTAGGAGAGGAACTTTGTCTTCTGAATCAGAAAAATAAGAGGAAGCGCTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTTTTTTAAGGAGTGTCCACATCCAGATGACAAGCAAAGAAAGCAGCTGAGCCATGAGCTAGGACTCGAACCCCTCCAAGTCAAGTTCTGGTTCCAGAACAAGCGCACACAAATCAAGGCTCAACAAGAACGTCATGAGAATGCAATATTAAAAGCTCAAAACGAGAAGCTAAGAGCAGAGAACATGAGGTACAAAGAAGCTCTAACCAGTACCAGTTGCCCTAATTGTGGAGGTCCCGCTGCCCTTGGTGAAATGTCCTTTGATGCTCAACATTTGAAAATTGACAATGCACGTTTAAGAGACAAGATAGAGATATTAAACAGTAGTAGCAAATATGGAGGGAAGGCATGGGGTTCTCATTCTCATATTGTTCAATGTGGAGGGCAGATTGATCATCTTGGGGTTGGAAGATCATCATTAAAGCCCCAACAAGGTGGTGATCATTTGTTAGGGGAAATGTATGGATCAGGAGTGGGAGAGACAATGTTAAAAAAGTCAGTGACTACTGAGATTGATAAGCCAGTAATTGTTGAGCTTGCAGTTGCAGCCATGGAAGAAGTTTGTAGAATGGCTGAAGCAGGTGAGCCATTGTGGGTTACTGGTGAAAACTCCATGGAAATGCTGAATGAAGATGAGTATTTGAGGACTTACTCTACAAGAATTGGCCCTAGAATTGTGGGGCTTAGCTTTGAAGCTTCAAGACAAACTTCCATTCTTGCTTTCAATCATTTAAAACTTGTCCACCTTCTCATGGACGTGAATCAATGGTCAACCATATTTTGCGGGATTGTTTCAAGAGCATTGACACTCGAAGTCTTATCAAATGGAGTTGGTGGCGACTATAATGGAGCTCTACAAGTCGTACAACATGTAGAAGTGGATGATCGAGCAGTACACAATTTGTACAAACGAGTGGTTACATGTGGGCTTGCCTTCGGCGCAAAACGATGGATGGCTACTCTTCATCGACAATGCCAACGCCTAACCAATTCCTCCTCTACTAATATTCCTGCACTAGACATTTGCGGGCAAGAGGGGAGGAAGAGCGTTATGAAGCTAGCAGAGAGAATGGTGAGGAGCTTCTGCAGTGGCGTTGGGGCTGCTACTGCACACAATTGGACCACATTATCCACCATTGATTCCGACGATGTTCGAGTCATGGCCAGAAAGAGCCTCGACGACCCAGGTCGACCTCCTGGGATTCTTCTCAATGCAGCAACTTCTTTCTGGATTCCAATTCCCCCTAATAGAGTCTTTCATTTTCTCCGAGATCAAAACACCCGTAATCAGTGGGATATACTTTCAAACGGTGGGTTAGTCCAAGAAATGGCTCGCATTGGCAACGATCGAAACTCAGGAAACTGTGTCTCATTACTTCGTGTTAACAGTTCAAATTCAAGTCAGAGCAACATGTTAATACTACAAGAGAGCTGCAGCGACAACATCACCGGTTCCTACATAATCTACGCCCCAGTCGACACCGTCGCCATGAACATGGTCTTAAGCGGCGGAGATCCTGATTACGTGGCTCTCTTGCCATCCGGATTCGCCATTCTCCCTGATGGGCCGCCCATTGGGCCTGATGGGCCTCCAGGAATTCTCGAATTCGGGTCCGGTGGTTCCTTGTTGACCGTTGCTTTTCAAATATTAGTGGACTCAGTCCCAACTGCCAAATTGTCTCTTGGGTCCGTCGCTACGGTTAACAGCCTCATCAAGTGCACGGTGGAGCGGATTAGAGCTGCACTCATGTGTGACCAACCCATGAATTAA 2001 45.58 MFGAHGFEDAHEDLLLEMTQKNFETELEKFGEDEFESRSVTDAMEAPLGEELCLLNQKNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSHELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALTSTSCPNCGGPAALGEMSFDAQHLKIDNARLRDKIEILNSSSKYGGKAWGSHSHIVQCGGQIDHLGVGRSSLKPQQGGDHLLGEMYGSGVGETMLKKSVTTEIDKPVIVELAVAAMEEVCRMAEAGEPLWVTGENSMEMLNEDEYLRTYSTRIGPRIVGLSFEASRQTSILAFNHLKLVHLLMDVNQWSTIFCGIVSRALTLEVLSNGVGGDYNGALQVVQHVEVDDRAVHNLYKRVVTCGLAFGAKRWMATLHRQCQRLTNSSSTNIPALDICGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDDVRVMARKSLDDPGRPPGILLNAATSFWIPIPPNRVFHFLRDQNTRNQWDILSNGGLVQEMARIGNDRNSGNCVSLLRVNSSNSSQSNMLILQESCSDNITGSYIIYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPPIGPDGPPGILEFGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAALMCDQPMN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5553402 5562540 - Lsi02G006240.1 Lsi02g00624 655366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00624 666 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 24 365 - -
Lsi02g00624 666 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Lsi02g00624 666 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 365 662 IPR042160 -
Lsi02g00624 666 CDD homeodomain 60 119 IPR001356 GO:0003677
Lsi02g00624 666 Pfam START domain 256 366 IPR002913 GO:0008289
Lsi02g00624 666 Coils Coil 166 186 - -
Lsi02g00624 666 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 365 IPR042160 -
Lsi02g00624 666 ProSiteProfiles START domain profile. 246 353 IPR002913 GO:0008289
Lsi02g00624 666 SUPERFAMILY Bet v1-like 428 656 - -
Lsi02g00624 666 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Lsi02g00624 666 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
Lsi02g00624 666 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Lsi02g00624 666 Gene3D - 55 135 - -
Lsi02g00624 666 SMART HOX_1 59 122 IPR001356 GO:0003677
Lsi02g00624 666 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 365 662 - -
Lsi02g00624 666 Coils Coil 112 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00412 Lsi02g00624 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00624 Lsi-Chr2:5553402 Lsi10g00143 Lsi-Chr10:2279076 1.41E-97 dispersed
Lsi01g00411 Lsi-Chr1:3510514 Lsi02g00624 Lsi-Chr2:5553402 4.00E-28 wgd
Lsi11g01463 Lsi-Chr11:23201740 Lsi02g00624 Lsi-Chr2:5553402 2.37E-06 wgd
Lsi02g00624 Lsi-Chr2:5553402 Lsi04g01227 Lsi-Chr4:19023880 8.46E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24770 PF01852 START 4.70E-07 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00624 K09338 - csin:114257085 725.702