Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00640 ATGTTCAATTTTCCCACTTTTCTCTTTCTCTTCACCTTCCTCGTGATCAATGGCCACGCACTGACTCTTCACCGTTGCTTCAATTCCAATTACACCACTAACTCTATCTTTGAATCCAACCTTAATCTCCTCTTTTCAAATCTCTCCATCAACGCCCCCGGAACTAACAGATTCTTCAATACTTCCATCGGCCGTACACCAAACGACACCGTTTACGGCTTCTTCCAATGCCGTGGAGACACCACCGACGGCTCCTGCCGTGATTGCGTAATGGAAGCCACCAGAAACATAGCCCATCAATTCTGTCCCTTCAAGAAAGGCGCTGTGGTTTGGTACGACGATTGTTTGTTGCGTTATTCCGACCAATTTTTCTTTTCTGCTGTGTCCACTGAGCCAAATTACGACTTGAAAAATCCCAAGGAAATTGGCAACATCGACAGGCCTCGTTTCAACGAATTAGTGATGGCCACGTTGACGGCCGTTGCGGGTAAGGCCTCTGTGTCTGTGGGGGAAATGTATGCAACGCAAGAGGTAATTTTCTCATCAAATACAACGGTTTATGCATTGGGTCAGTGCACTGCGGATTTGTCGAATACGAATTGCCATGATTGCTTGACACGAGCTATTAGGGATATTCCTCGTTGTTGTGGAAATAAAATTGGTGGCAGAGTTTTGTTTCCGAGCTGTTATGTTCGTTATGAACTTTACTCGTTTTACCAACTCAATATGACTACTCTAGTAGAGCCTCCTTCCACTCATCTCCTCCCCAATTCCAATACTCCATCAGGGGAAAACAGATTTTCGAGTGGCATAATCGTTGTAGCCATTGTAGTTCCAATTACTGTCTCCATTTTGCTTTTTCTTCTGGGCTGGTGTTTCCTACGTCGAAGAGGAAAAACCAAGTACACTCCTCAAAAGCAGGATACTGTTGATGATAATGAGATTTCCACTGTGGAATCTCTGCAATTCGATTTCAAAACAATCCATGTTGCCACTAACAAATTCTCTGAGGAAAACAAGTTGGGAGAAGGTGGATTTGGTGCAGTCTACAAGGGTAGGCTTGAAAATGGACAAGAGAAAGCAGTGAAAAGATTATCAAGTGGATCTTTGCAAGGCTCAAAAGAGTTTAAAAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTAGTAAGGCTATTGGGATTCTGCTTGAAGAGGGAAGAAAAGATACTCATCTATGAATACATTCCCAACAAAAGCCTTGATTATTTCTTATTTGATCCTGAAAGACAAAGAGTGTTAGATTGGTCGAAACGATATAAGATGATTATTGGAATTGCTCGAGGAATGTTGTATCTACATGAAGATTCTCGACTTCGTATTATTCATCGCGATCTTAAAGTCAATAACATTTTGGTAGACGAAGATATGAATCCAAAGATTTCGGACTTTGGTATGGCAAAGATTATCCAAATTGATGAAAGTCAAGGAAATACGAGTCGAATTGTCGGTACCTATGGCTACATATCTCCTGAATATGTATTGCATGGAAACTTCTCTATAAAGTCTGATGTATATAGTTTTGGAGTATTAGTATCGGAGATTATAAGTGGCAAGAAAAACAGCAACTTTTATATGTCAGGTCTTGCTGAAGATATCTTAATTTACGCTTGGAAACTATGGAAGGAGGAAACACCATTAGAACTATTGGATTCACATATGAGAGACAATTGTTCAAGAGATAAGGTTGTTAGATGCATTCATATTGCTTTACTTTGTGTTCAAGAAGATCCTACCTACGGACCATCTATGGCATCCATTGTTCTTATGCTAAATAGTCATTCTGTTACTTTGCCTTTGCCAAAAGAGCCACCGTTCTTCATGCGAATTAGAAGCAATGGCGTTAAAATAGACATTGATGCTAATAAATAA 1917 40.27 MFNFPTFLFLFTFLVINGHALTLHRCFNSNYTTNSIFESNLNLLFSNLSINAPGTNRFFNTSIGRTPNDTVYGFFQCRGDTTDGSCRDCVMEATRNIAHQFCPFKKGAVVWYDDCLLRYSDQFFFSAVSTEPNYDLKNPKEIGNIDRPRFNELVMATLTAVAGKASVSVGEMYATQEVIFSSNTTVYALGQCTADLSNTNCHDCLTRAIRDIPRCCGNKIGGRVLFPSCYVRYELYSFYQLNMTTLVEPPSTHLLPNSNTPSGENRFSSGIIVVAIVVPITVSILLFLLGWCFLRRRGKTKYTPQKQDTVDDNEISTVESLQFDFKTIHVATNKFSEENKLGEGGFGAVYKGRLENGQEKAVKRLSSGSLQGSKEFKNEVMLVAKLQHRNLVRLLGFCLKREEKILIYEYIPNKSLDYFLFDPERQRVLDWSKRYKMIIGIARGMLYLHEDSRLRIIHRDLKVNNILVDEDMNPKISDFGMAKIIQIDESQGNTSRIVGTYGYISPEYVLHGNFSIKSDVYSFGVLVSEIISGKKNSNFYMSGLAEDILIYAWKLWKEETPLELLDSHMRDNCSRDKVVRCIHIALLCVQEDPTYGPSMASIVLMLNSHSVTLPLPKEPPFFMRIRSNGVKIDIDANK 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5724632 5728792 + Lsi02G006400.1 Lsi02g00640 655382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00640 638 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 630 - -
Lsi02g00640 638 SMART serkin_6 335 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00640 638 ProSiteProfiles Gnk2-homologous domain profile. 130 238 IPR002902 -
Lsi02g00640 638 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Lsi02g00640 638 Pfam Salt stress response/antifungal 149 236 IPR002902 -
Lsi02g00640 638 ProSiteProfiles Gnk2-homologous domain profile. 19 124 IPR002902 -
Lsi02g00640 638 Gene3D Transferase(Phosphotransferase) domain 1 411 613 - -
Lsi02g00640 638 CDD STKc_IRAK 341 607 - -
Lsi02g00640 638 SUPERFAMILY Protein kinase-like (PK-like) 320 627 IPR011009 -
Lsi02g00640 638 Gene3D Phosphorylase Kinase; domain 1 296 410 - -
Lsi02g00640 638 Gene3D - 136 238 IPR038408 -
Lsi02g00640 638 Gene3D - 19 124 IPR038408 -
Lsi02g00640 638 Pfam Protein tyrosine and serine/threonine kinase 338 604 IPR001245 GO:0004672|GO:0006468
Lsi02g00640 638 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00640 638 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 630 - -
Lsi02g00640 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00392 Lsi02g00640 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00634 Lsi-Chr2:5659371 Lsi02g00640 Lsi-Chr2:5724632 0 dispersed
Lsi02g00640 Lsi-Chr2:5724632 Lsi02g00644 Lsi-Chr2:5766332 0 dispersed
Lsi02g00643 Lsi-Chr2:5760182 Lsi02g00640 Lsi-Chr2:5724632 2.57E-109 dispersed
Lsi09g01888 Lsi-Chr9:27695403 Lsi02g00640 Lsi-Chr2:5724632 4.26E-23 dispersed
Lsi11g01479 Lsi-Chr11:23326617 Lsi02g00640 Lsi-Chr2:5724632 1.68E-38 dispersed
Lsi02g00637 Lsi-Chr2:5689252 Lsi02g00640 Lsi-Chr2:5724632 4.61E-55 proximal
Lsi02g00640 Lsi-Chr2:5724632 Lsi02g00641 Lsi-Chr2:5729728 0 tandem
Lsi01g00383 Lsi-Chr1:3344927 Lsi02g00640 Lsi-Chr2:5724632 4.83E-169 wgd
Lsi11g01476 Lsi-Chr11:23311286 Lsi02g00640 Lsi-Chr2:5724632 2.48E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83359 PF07714 PK_Tyr_Ser-Thr 4.80E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00640 - - csv:101207923 851.662