Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00641 ATGCTCAATTTCCCATCTTTCTTCATCCTCCTCAGTTTCATTATCCATGGAAACACTCAAACTCCAGATGAATACCCATATCGCATTTGTTCATCCTCCAATTTCACCCAAAACTCCACCTACCACATCAACCTCAATCTTCTCTTTACAAATCTCTCCGCCAACGCCCCCGGAATTAACGGATTCTTCAACACTTCCCTTCGCCGACCACCAAACGACACCGTTTACGGCCTCTTCCAGTGCCGTGGAGACGTCACAAACACCACTTGTCGAAATTGTGTTGCCTTAGCTACAAAAAACTCTGCCGAAAGTCTCTGTCCCCTGAGCCAAGGCGCTGTGGTTTGGTACGACGAATGCCTATTCCGCTATTCCAACCAATCTTTCTTTTCCGTGCTGTCCACAAGGCCAGCTCTGTTAGCACATAATGAGGCTGATATAGGCATCGACACAGCTCGATTCAACCAATTAGTCATGTCCACTTTGAGGGACACTGCAGCCAACGCCTCTTCGGTTGGCAAATTGTTCGCAAAGCAGGACGCGTATTTCACATCTGATATTACGCTTTACACATTAACACAATGTATCCACGATTTGTCCTACTTGGATTGCCAACAATGTTTAGCGCAATCTATCGATTATGTTCCCAATTGTTGTGCTAATAAACGAGGTGGGAGAATTCTGTTTCCCAGCTGTTACGTTCGTTATGAAATTTACAATTTTTATGAAATCACAACAAAGAATCTAGTTCCCACTCCTCCACCGTCTCTTCCTCCTTCTTCGTCGGGGGAAAACAGAGTCTCACGGGTGTCAATTGTGGCCATTGTGGCTCCAATAACAATTAGTGTCTTCATACTGCTAGTTGTTGTGGGATGGTGTTTCCTACGCCGAAGAGCAAAGAAGAAATATACTTCTGTAAAGGAAGATAGTGTTATTGATGAGATGACCACTGTTGAATCTCTGCAATTTGATTTGAAAACAATCAGTGATGCTACTAACAATTTCTCAGAGGAAAACAGATTAGGAGAAGGTGGATTTGGTCCAGTTTACAAGGGTAGGCTTGAAAATGGACAAGAGATAGCAGTGAAGAGACTATCAAGAGGATCTTTACAAGGTTTTGAAGAGTTCAAGAATGAAGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTAGTGAGACTATTGGGATTTTGCTTGGAGGGTCGAGAAAAGATACTTATCTATGAATACATACCCAATAAAAGCCTTCACTTTTTCTTATTTGATCCAAAGAGACGACGAGAGTTGGATTGGTTGAAACGGTATAAGATCATCCATGGAATTGCTCGAGGAATCTTATATCTACATGAAGATTCTCGTCTTCGAATTATTCATCGTGATCTTAAAACTAGTAATATCTTGTTAGATAGGGATATGAATCCCAAAATTTCAGATTTTGGTATGGCAAGAATTATCCAAGTGGATCAAACTTGA 1470 41.5 MLNFPSFFILLSFIIHGNTQTPDEYPYRICSSSNFTQNSTYHINLNLLFTNLSANAPGINGFFNTSLRRPPNDTVYGLFQCRGDVTNTTCRNCVALATKNSAESLCPLSQGAVVWYDECLFRYSNQSFFSVLSTRPALLAHNEADIGIDTARFNQLVMSTLRDTAANASSVGKLFAKQDAYFTSDITLYTLTQCIHDLSYLDCQQCLAQSIDYVPNCCANKRGGRILFPSCYVRYEIYNFYEITTKNLVPTPPPSLPPSSSGENRVSRVSIVAIVAPITISVFILLVVVGWCFLRRRAKKKYTSVKEDSVIDEMTTVESLQFDLKTISDATNNFSEENRLGEGGFGPVYKGRLENGQEIAVKRLSRGSLQGFEEFKNEVMLVAKLQHRNLVRLLGFCLEGREKILIYEYIPNKSLHFFLFDPKRRRELDWLKRYKIIHGIARGILYLHEDSRLRIIHRDLKTSNILLDRDMNPKISDFGMARIIQVDQT 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5729728 5732879 + Lsi02G006410.1 Lsi02g00641 655383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00641 489 Pfam Protein tyrosine and serine/threonine kinase 337 487 IPR001245 GO:0004672|GO:0006468
Lsi02g00641 489 Gene3D - 141 240 IPR038408 -
Lsi02g00641 489 Gene3D - 23 128 IPR038408 -
Lsi02g00641 489 SUPERFAMILY Protein kinase-like (PK-like) 313 488 IPR011009 -
Lsi02g00641 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Lsi02g00641 489 Gene3D Transferase(Phosphotransferase) domain 1 410 489 - -
Lsi02g00641 489 Pfam Salt stress response/antifungal 30 126 IPR002902 -
Lsi02g00641 489 Pfam Salt stress response/antifungal 151 237 IPR002902 -
Lsi02g00641 489 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Lsi02g00641 489 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 489 - -
Lsi02g00641 489 Gene3D Phosphorylase Kinase; domain 1 295 409 - -
Lsi02g00641 489 ProSiteProfiles Gnk2-homologous domain profile. 134 240 IPR002902 -
Lsi02g00641 489 SMART serkin_6 334 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00641 489 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 27 489 - -
Lsi02g00641 489 ProSiteProfiles Protein kinase domain profile. 334 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00641 Lsi-Chr2:5729728 Lsi02g00644 Lsi-Chr2:5766332 0 dispersed
Lsi02g00645 Lsi-Chr2:5775113 Lsi02g00641 Lsi-Chr2:5729728 3.14E-62 dispersed
Lsi02g00646 Lsi-Chr2:5785141 Lsi02g00641 Lsi-Chr2:5729728 1.99E-67 dispersed
Lsi02g00640 Lsi-Chr2:5724632 Lsi02g00641 Lsi-Chr2:5729728 0 tandem
Lsi02g00641 Lsi-Chr2:5729728 Lsi02g00642 Lsi-Chr2:5741799 1.58E-126 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83360 PF07714 PK_Tyr_Ser-Thr 1.40E-31 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00641 - - csv:101205281 824.698