Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00642 ATGCAGAGTTTTGTGGTGTTTGTATTTTCCTCCTTAGTTTCCCCATCCATGGCCATGGAATTATCTCCGACGAATATTTCCAAAATCCGTTCCGTTACTGCTCCAACGCCACCTCCTCCATCTCCTCCACCTCCTCTACTTTCTCCACCTCCTCCTCCTCCACCTGCTCCACCTCCACCTCCTCCAGCCCAATCTCCGCCGGATTTGAACTCTTCTCCCCCGCCTCCTTCGTTGCTCTCCTCTCCTTCCGCACCGCTACAAAACTCTACGCCGCCTCCTTCACTACTTTCAGGGGAAAGCAGATCCTTATCCGTCTCGATTGTGGTCATTGTGGCTCCAATTACAATTACAATTACTGCCTTCATACTTCTACTTGTTGCTGGATGTTGTTTCCTGCGACGAAGAGTAAAGAAAAAACACACTACTTTAAAGGAAGATACTGTCGTTAATGAGTTGACCACCCAGGAATCTCTACAATATGATTTCAATACAATCGATGCCGCTACTAACAATTTCTCAGCCAATAACAAACTAGGCGAAGGTGGATTTGGTGTAGTCTACAAGGGTAGGCTTGATAATGGACAAGAGATAGCAGTAAAAAGATTGTCAAGAAGATCTTTGCAAGGTTCTGAAGAATTCAAGAATGAAATCATGGTTGTTGCTAAACTTCAACATAGAAATCTAGTAAGGCTATTGGGATTTTGCTTGGAGGGTGAAGAAAAGATACTTGTCTATGAATACATTCCCAACAAAAGCCTTGACTATTTCCTCTTTGACGCCAAGAGACAGAGAGAATTGGATTGGTTGAGCCGACATAAGATTATTAATGGTGTTGCTCGTGGAATTTTATATCTACCTGAAGATTCTCGACTTAGAATTATTCATCGTGATCTTAAAGCTAGTAATATCTTGTTAGACGAAGATATGTATCCAAAAATTTCAGACTTTGGTATGGCAAGAATTATGCAACTGGATCAAAATCAAGCAAATTTTACCAATCGAATTGTTGGTACCTATGGTTACATGTCTCCTGAATATGCAATGCATGGAAATTTCTCTTCGAAATCTGATGTGTATAGCTTTGGAGTCTTAGTCTTGGAGATAATAAGCGGCAAAAAAAATAGCACCTTTTATCTATCGGAGCTTGCTGAAGACATCTTAACTTACGCATGGAAGCTATGGAAGGAGGAGATGCCATTAGAATTATTGGACCCAAGTCTGCAAAATAGCTACTCAAAAAATGAAGTGGTTAGATGCATTCATATTGGTTTATTATGTGTGCAAGATGATCCAAGTCGTAGACCTTCCATGGCATCTATTGTTCTAATGCTCAACGGTTACTCTGTTCCTTTGCCTTTGCCCGAAGAACCAACAATCTTCATGCATAATACAGAGAATGCAATTGTAATTAATAGTGATCAACTTCCCACTAACCTTTTCATTTCGTCGACCAATGAAATATCAGTAACTGAGTTGCATCCAAGATGA 1488 40.66 MQSFVVFVFSSLVSPSMAMELSPTNISKIRSVTAPTPPPPSPPPPLLSPPPPPPPAPPPPPPAQSPPDLNSSPPPPSLLSSPSAPLQNSTPPPSLLSGESRSLSVSIVVIVAPITITITAFILLLVAGCCFLRRRVKKKHTTLKEDTVVNELTTQESLQYDFNTIDAATNNFSANNKLGEGGFGVVYKGRLDNGQEIAVKRLSRRSLQGSEEFKNEIMVVAKLQHRNLVRLLGFCLEGEEKILVYEYIPNKSLDYFLFDAKRQRELDWLSRHKIINGVARGILYLPEDSRLRIIHRDLKASNILLDEDMYPKISDFGMARIMQLDQNQANFTNRIVGTYGYMSPEYAMHGNFSSKSDVYSFGVLVLEIISGKKNSTFYLSELAEDILTYAWKLWKEEMPLELLDPSLQNSYSKNEVVRCIHIGLLCVQDDPSRRPSMASIVLMLNGYSVPLPLPEEPTIFMHNTENAIVINSDQLPTNLFISSTNEISVTELHPR 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5741799 5744252 + Lsi02G006420.1 Lsi02g00642 655384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00642 495 MobiDBLite consensus disorder prediction 33 89 - -
Lsi02g00642 495 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 92 493 - -
Lsi02g00642 495 SUPERFAMILY Formin homology 2 domain (FH2 domain) 50 61 - -
Lsi02g00642 495 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Lsi02g00642 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Lsi02g00642 495 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 92 493 - -
Lsi02g00642 495 MobiDBLite consensus disorder prediction 29 97 - -
Lsi02g00642 495 PRINTS Proline rich extensin signature 60 76 - -
Lsi02g00642 495 PRINTS Proline rich extensin signature 81 98 - -
Lsi02g00642 495 PRINTS Proline rich extensin signature 33 54 - -
Lsi02g00642 495 SUPERFAMILY Protein kinase-like (PK-like) 157 479 IPR011009 -
Lsi02g00642 495 CDD STKc_IRAK 178 446 - -
Lsi02g00642 495 Gene3D Phosphorylase Kinase; domain 1 133 247 - -
Lsi02g00642 495 ProSiteProfiles Protein kinase domain profile. 172 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00642 495 Gene3D Transferase(Phosphotransferase) domain 1 248 449 - -
Lsi02g00642 495 SMART serkin_6 172 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00642 495 Pfam Protein tyrosine and serine/threonine kinase 174 442 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00642 Lsi-Chr2:5741799 Lsi02g00644 Lsi-Chr2:5766332 0 dispersed
Lsi02g00641 Lsi-Chr2:5729728 Lsi02g00642 Lsi-Chr2:5741799 1.58E-126 tandem
Lsi02g00642 Lsi-Chr2:5741799 Lsi02g00643 Lsi-Chr2:5760182 3.02E-157 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83361 PF07714 PK_Tyr_Ser-Thr 5.80E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00642 - - bhj:120082493 672.159