Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00643 ATGGTTGTTGCTAAACTTCAACATAGAAATCTAGTGAGGTTATTGGGGTTCTGCTTGGAGGGTGAAGAAAAGATACTTATCTATGAATACATTCCCAACAAAAGCCTTGACTATTTCCTATTTGACTCCGAGAGGCAGAGAGAATTGGATTGGTTGACGCGATACAAGATCATTAACGGCATTGCTCGTGGAATTTTATATCTACATAAAGATTCTCGACTTAGAATTATTCACCGTGATCTCAAAGCTAGTAATGTCTTGTTAGATGAGGATATGTATCCAAAAATTTCAGACTTTGATATGGCAAGGATTATTCAAATCGATCAAAATGAAGCAAATATTACCAATCAAATTGTTGGTACCTATGGTTACATGTCTCCTGAATATACAATGCATGGAAATTTCTCTACGAAATCCGATGTGTATAGCTTTGGAGTCTTAATCTTGGAGATAATAAGTGGCAAGAAAAACAGCACCTTTTATCTATCGAAGCTTGCTGAAGACATCTTAACTTACGCATGGAAGCTATGGAAGGAGGGGATGCCATTAGAATTATTGGACCCAAGTCTGCAAAATAGTTATTCTGTTCCTTTGCCTTTGCCCGAAGAACCAACAATCTTCATGCACAATACAGACAATGCAATGGTAATCGATAGTGATCAACTTGCCACTAACCTTTTCATTTCGTCGACCAATGAAAGATCAATAACTGAGTTACATCCGAGATGA 729 37.31 MVVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDYFLFDSERQRELDWLTRYKIINGIARGILYLHKDSRLRIIHRDLKASNVLLDEDMYPKISDFDMARIIQIDQNEANITNQIVGTYGYMSPEYTMHGNFSTKSDVYSFGVLILEIISGKKNSTFYLSKLAEDILTYAWKLWKEGMPLELLDPSLQNSYSVPLPLPEEPTIFMHNTDNAMVIDSDQLATNLFISSTNERSITELHPR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5760182 5761406 + Lsi02G006430.1 Lsi02g00643 655385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00643 242 ProSiteProfiles Protein kinase domain profile. 1 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00643 242 SUPERFAMILY Protein kinase-like (PK-like) 3 193 IPR011009 -
Lsi02g00643 242 Pfam Protein tyrosine and serine/threonine kinase 3 156 IPR001245 GO:0004672|GO:0006468
Lsi02g00643 242 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Lsi02g00643 242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Lsi02g00643 242 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 195 - -
Lsi02g00643 242 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 2 195 - -
Lsi02g00643 242 Gene3D Transferase(Phosphotransferase) domain 1 31 217 - -
Lsi02g00643 242 SMART serkin_6 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00643 Lsi-Chr2:5760182 Lsi02g00640 Lsi-Chr2:5724632 2.57E-109 dispersed
Lsi02g00642 Lsi-Chr2:5741799 Lsi02g00643 Lsi-Chr2:5760182 3.02E-157 tandem
Lsi02g00643 Lsi-Chr2:5760182 Lsi02g00644 Lsi-Chr2:5766332 1.45E-126 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83362 PF07714 PK_Tyr_Ser-Thr 3.10E-36 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00643 - - bhj:120082493 417.157