Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00644 ATGAAACTTCTCTGTTTTCATAAATTTCGAACTTGGTCCTCCCAACCAATAAATGAGATTTCCGACACCGACTTGACTCTTTTTCTCTCTGGGCGTTCCGACTTGGAGATTGAATTATTTGTCTTCTTTTCCAATTCATTCTGCAAAATCCTTCTTCTGGGTTCATATAATTCCCAATATTTGTTCACAAACCTTCAACAAACCCACTCCATTACCATGCTCTATTTTCTTACTTTCCTCTTCCTCCTTAATTTCCTTATCCATGGAAACGCTCAGACCGAAGCTTCTTACCCATATCGCAGTTGCTTGTCCGGCAATTTCACTCAGAGCAGCACCTATCAGTCCAATCTCAATCTTCTCTTTTCAACTCTCTCCACCAACGGCCCCCCAAGTAACAGATTCTTCAATACTTCCACTGGCCGACCCCCAAACAACACCGTTTACGGTCTCTTCCAGTGCCGTGGAGACGTCACCGACGCCGTCTGTCGAACTTCCTTGGCCACCGCAACCAGAGACGCAGAGCAGTTGTACTGTCCTCTGAGAAAAGCCGCTGTGATTTGGTACGACGAAATCATATTCCGCTATTCCGACCAACCTTTCTTTTCCGTCATTTCCTCAACCCCAATTTTGCAGTTACGGAATACGGGTGATATAGACGTCGACAAGGCTCGATTCAACCAACTAGTCATGTCCACGATGAGAGCCACCGCGGCTCAGGCGGCGGACGCCTCTTCGGTGGGCGGTTTGTTTGCAACCCAGATAGCTAATTTCACTACAGATTTAAACCTTTACACATTAGCTCAATGTACCGGCGATTTGTCTAATACGGATTGCGAAGAATGCTTACGCCAAGCTACCAATGGAATTCCGAGTTGTTGTACTAATAAACGAGGTGGGCGAGTTCTGCTTCCTAGCTGCTATGTTCGTTACGAAGTTTACATGTTTTACGAATTAACGCCAACAAATTCCATACCGCCTCCGGCTACTCCCACGCCCAGTTCCAGAACCCCAACACCGCCTCTTCTTCCTTCTTCCCCTCAGCCAGGGGAAAGAAGGTTCTCAACGCTGTTAATTGTAGCCATCGTGGCTCCAATTCCTGTCTCCATATTGCTCTTTGTTGTGGGATATTGTTTCCTACGCCAGAGAGCGAAGAAGAGATACTCTGCTGTGAAGGAAGATAGTGTTGTTAATGAGATTACCACTGTGGAATCTCTGCAATTTGATTTCAAAACAATCGAAGCTGCTACTAACAAATTCTCAGAGGAAAACAGGTTGGGAGAAGGCGGATTTGGTGCTGTCTTTAAGGGTAGGCTTGAAAATGGACAAGAGATAGCAGTGAAGAGACTGTCAAGAGGATCTCTGCAAGGTTCTGAAGAGTTCAAGAATGAGGTTATGTTGGTAGCTAAGCTTCAACATAGAAATCTAGTAAGATTATTGGGATTTTGCTTGGAGGGTGAAGAAAAGATACTCATCTATGAATACATTCCCAACAAAAGCTTAGACTTTTTCTTGTTTGATCTAGAGGGACAAATGCAGTTGGATTGGTTGAAACGATATAAGATCATCAATGGAATTGCTCGAGGAATATTGTATCTACATGAAGATTCTCGTCTTAGAATTATTCACCGTGATCTTAAAGCGAGTAACATCTTGTTGGACAAAGATATGAATGCAAAAATTTCAGACTTTGGCATGGCAAGGATTATTCAAATGGATCAAACTCAAGGAAATACAAGTAGAATTGTTGGTACCTATGGTTACATGTCTCCTGAGTATGCAATGCACGGAAATTTCTCAATGAAATCCGATGTGTATAGCTTTGGAGTATTAGTCTTGGAGATTTTAAGTGGTAAGAAAAACAACACCTTTTACTTGTCAGATCTTGCCGAAGACATTTTGACATATGCTTGGAAATTGTGGAAGGATGGAACACCATTAGAATTATTGGACCCAATGTTGAGAGATAGTTACTCGAGAAATGAGGTACTTAGATGCATTCATATTGCTTTATTATGTGTTCAAGAGGATCCTAACAGCAGACCTTCCATGGCATCCATTGTTCTTATGCTTAATAGTTATTCTGTTACTTTGCCATTGCCTGAAGAGCCAGCGTTCTTCATGCGTAGTAAAGACAATGACATTACAATGGGCAGCGATCATTCTACTAATAAGTCTATTCAGTTGTCTGTCAATGAAACATCTATATCTGAGTTGCATCCACGATGA 2226 42.36 MKLLCFHKFRTWSSQPINEISDTDLTLFLSGRSDLEIELFVFFSNSFCKILLLGSYNSQYLFTNLQQTHSITMLYFLTFLFLLNFLIHGNAQTEASYPYRSCLSGNFTQSSTYQSNLNLLFSTLSTNGPPSNRFFNTSTGRPPNNTVYGLFQCRGDVTDAVCRTSLATATRDAEQLYCPLRKAAVIWYDEIIFRYSDQPFFSVISSTPILQLRNTGDIDVDKARFNQLVMSTMRATAAQAADASSVGGLFATQIANFTTDLNLYTLAQCTGDLSNTDCEECLRQATNGIPSCCTNKRGGRVLLPSCYVRYEVYMFYELTPTNSIPPPATPTPSSRTPTPPLLPSSPQPGERRFSTLLIVAIVAPIPVSILLFVVGYCFLRQRAKKRYSAVKEDSVVNEITTVESLQFDFKTIEAATNKFSEENRLGEGGFGAVFKGRLENGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDFFLFDLEGQMQLDWLKRYKIINGIARGILYLHEDSRLRIIHRDLKASNILLDKDMNAKISDFGMARIIQMDQTQGNTSRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEILSGKKNNTFYLSDLAEDILTYAWKLWKDGTPLELLDPMLRDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPLPEEPAFFMRSKDNDITMGSDHSTNKSIQLSVNETSISELHPR 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5766332 5769392 + Lsi02G006440.1 Lsi02g00644 655386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00644 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Lsi02g00644 741 Pfam Salt stress response/antifungal 105 197 IPR002902 -
Lsi02g00644 741 Pfam Salt stress response/antifungal 222 312 IPR002902 -
Lsi02g00644 741 SMART serkin_6 419 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00644 741 MobiDBLite consensus disorder prediction 324 346 - -
Lsi02g00644 741 ProSitePatterns Protein kinases ATP-binding region signature. 425 447 IPR017441 GO:0005524
Lsi02g00644 741 MobiDBLite consensus disorder prediction 324 348 - -
Lsi02g00644 741 ProSiteProfiles Protein kinase domain profile. 419 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00644 741 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 92 739 - -
Lsi02g00644 741 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 92 739 - -
Lsi02g00644 741 Pfam Protein tyrosine and serine/threonine kinase 422 688 IPR001245 GO:0004672|GO:0006468
Lsi02g00644 741 ProSiteProfiles Gnk2-homologous domain profile. 206 315 IPR002902 -
Lsi02g00644 741 Gene3D Phosphorylase Kinase; domain 1 380 494 - -
Lsi02g00644 741 CDD STKc_IRAK 425 691 - -
Lsi02g00644 741 Gene3D - 94 200 IPR038408 -
Lsi02g00644 741 Gene3D - 207 315 IPR038408 -
Lsi02g00644 741 ProSiteProfiles Gnk2-homologous domain profile. 95 200 IPR002902 -
Lsi02g00644 741 SUPERFAMILY Protein kinase-like (PK-like) 404 722 IPR011009 -
Lsi02g00644 741 Gene3D Transferase(Phosphotransferase) domain 1 495 697 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00468 Lsi02g00644 CCT
Lsi01g00391 Lsi02g00644 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00386 Lsi-Chr1:3360457 Lsi02g00644 Lsi-Chr2:5766332 3.77E-159 dispersed
Lsi01g00387 Lsi-Chr1:3364300 Lsi02g00644 Lsi-Chr2:5766332 2.06E-162 dispersed
Lsi02g00185 Lsi-Chr2:1581109 Lsi02g00644 Lsi-Chr2:5766332 3.31E-105 dispersed
Lsi02g00637 Lsi-Chr2:5689252 Lsi02g00644 Lsi-Chr2:5766332 1.27E-56 dispersed
Lsi02g00640 Lsi-Chr2:5724632 Lsi02g00644 Lsi-Chr2:5766332 0 dispersed
Lsi02g00641 Lsi-Chr2:5729728 Lsi02g00644 Lsi-Chr2:5766332 0 dispersed
Lsi02g00642 Lsi-Chr2:5741799 Lsi02g00644 Lsi-Chr2:5766332 0 dispersed
Lsi02g00644 Lsi-Chr2:5766332 Lsi02g00648 Lsi-Chr2:5801730 2.78E-170 dispersed
Lsi02g00643 Lsi-Chr2:5760182 Lsi02g00644 Lsi-Chr2:5766332 1.45E-126 tandem
Lsi02g00644 Lsi-Chr2:5766332 Lsi02g00645 Lsi-Chr2:5775113 2.46E-50 tandem
Lsi04g01120 Lsi-Chr4:14621727 Lsi02g00644 Lsi-Chr2:5766332 7.81E-84 transposed
Lsi01g00382 Lsi-Chr1:3339191 Lsi02g00644 Lsi-Chr2:5766332 2.16E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83363 PF07714 PK_Tyr_Ser-Thr 1.50E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00644 - - bhj:120082492 1102.81