Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00648 ATGTTCCAATCAAGCCTTCTCTTTTCTATCATCATCATCTTCATCAGCTCTGCAATTGCTCAACCAAATATCAGTTGTTCAAACGACAATGGAAATTACACATCCAACAGCACATACAGAGCCAATCTCAAACGCATCCTCTCTTCTCTCTCGACCGACAAACGCATTATCAAAGGCTTCCTCAACATCTCCTACGGCGAAAGCTCCGACAGAGTCAATGCCGCCGCACTCTGCAGAGGAGACCTCACCCCAGAGCTCTGCCACAGTTGCCTCAGCGACTCTGTTTCAGAGCTTCCAAAAAACTGTCCCAATCAAAAGGAAGCCATTATTTGGTACCCCAATTGCATGTTTCGCTATTCGGATCGACGGATTGTTGGGGTTGTGCGAGATATTCCTGCTTATTGGATGTGGAATGTTATGGATGCGATGGACCAGCAAGGGTTCAGTCGGGTGGTGCAGGGGCTGCTGGCTCCGCTTTCAGAGGAGGCTTCTTTGGGAGATTCCAACCTCAAATTTGCTGCTGGGAATGTCAGCACTGAGAGTGAGGATTATTCGTACGTTTATGGGATGGTGCAGTGCACACCGGATATGTCACGGGCACAATGCCTAAATTGCTTGCAAGGTCTTGCTGGGGTTGTTCAAACATGGTGTCCTGGGAAAATTGGAGCCAGAATTATTAGTCCCAATTGTAATCTTAGGTATGAGATTTTCAGTTTCTTTGACTCTGCAACTGTTTCTAGAGTTTCCCGGTCGACCTCGCCGCCGACTCCGCCATCCCCTCCCTTGCCACTCTCACCTCCCTCTCTTTCACCAAATACAACAACCAATGTGAAAGAAAAGGAGTCTAAAAGATTAAAGACTGTCATCATTATAGTTATGCCAGTGGTTGTGGCTGTTGTACTTGTGGTATTAATTGTCAGCATCTTCATCATTTTAAGAGCAAGAAAACAAAGGGTTGGAGTTGCAAGTTCAGAAGTGGATGACACTGCAGATTTGGAAACTTTGGTATTTGACATCAGTACTATAAGAACTGCAACAGATGACTTCTCAGATGCAAATATTATTGGACAAGGTGGATTTGGAGCTGTTTACAAGGGAAGCCTTGTTAATGGACAAGAAATAGCAGTGAAAAGACTCTCCCAAAACTCCATGCAAGGAGAAAGTGAGTTTAAGAATGAAATCCTGTTAGTGGCTAAACTTCAACACCGTAATTTAGTTCGGTTTCTCGGTTTCTGCCTCCACGAAGACGAAAAGATTCTCGTGTTCGAGTTTGTGCCAAACTCAAGTCTTGATAAATTCATATTTGATCCATTGAAAGGTCAAGATTTGGATTGGGGAGCACGCTACAAAATCATTGGAGGCATTGCTAGGGGCCTTGTTTATCTTCATGAAGATTCTCAAATTAAAATTATTCATCGAGATCTCAAAGCTGCAAATATTTTATTAGATGCAGAAATGAATCCTAAAATTTCAGATTTTGGCATGGCAAAGTTATTTAAAGAAGATCAAACACAAGGAAATACAAATAGAATTGTTGGCACTCAGGGATATATGGCTCCGGAATATGCAATGTACGGAGCGTTCTCAAACAAGTCGGACGTGTTTAGTTTCGGTGTGTTAGTGTTGGAGATTGTGATTGGCCAGAAAAACAGCTCTTTTCATCAGGAAGAGAACATAGATGATCTAATAAGCTATGCATGGAGAAATTGGAGGGCAGGAACAACACTAAATGTTGTAGATCCCATATTGAGAGGTGGGTCAAGTAATGAAATAAATAAATGTATCAACATTGGATTGCTTTGTGCTCAAGAAAATTCAGTTGACAGGCCAACTATGGACACTGTACTTCTCATGCTTAATAGTGATACAATCACTCTACCAATACTTTCTCCACCAGCTGATTTCAAGAATAGGAGCCCCAAATCAGACAGGTCTTCTTCACAAGAGTGTTCAGCACTCATATATATCAAAGGATTATTAGTTTCTACAATGCAAAAATGTATATTGTTGATAAGAGTGTTGGTTCTAAACTTCCTGCATTGTAGCAAAGCAGTGTTTGAGAACCACACAAAAAGCAGCATCTTCTCACCAAGTTACAAAGCTAAAACGAAATGTTCACATCGGTTTCGATAA 2133 41.73 MFQSSLLFSIIIIFISSAIAQPNISCSNDNGNYTSNSTYRANLKRILSSLSTDKRIIKGFLNISYGESSDRVNAAALCRGDLTPELCHSCLSDSVSELPKNCPNQKEAIIWYPNCMFRYSDRRIVGVVRDIPAYWMWNVMDAMDQQGFSRVVQGLLAPLSEEASLGDSNLKFAAGNVSTESEDYSYVYGMVQCTPDMSRAQCLNCLQGLAGVVQTWCPGKIGARIISPNCNLRYEIFSFFDSATVSRVSRSTSPPTPPSPPLPLSPPSLSPNTTTNVKEKESKRLKTVIIIVMPVVVAVVLVVLIVSIFIILRARKQRVGVASSEVDDTADLETLVFDISTIRTATDDFSDANIIGQGGFGAVYKGSLVNGQEIAVKRLSQNSMQGESEFKNEILLVAKLQHRNLVRFLGFCLHEDEKILVFEFVPNSSLDKFIFDPLKGQDLDWGARYKIIGGIARGLVYLHEDSQIKIIHRDLKAANILLDAEMNPKISDFGMAKLFKEDQTQGNTNRIVGTQGYMAPEYAMYGAFSNKSDVFSFGVLVLEIVIGQKNSSFHQEENIDDLISYAWRNWRAGTTLNVVDPILRGGSSNEINKCINIGLLCAQENSVDRPTMDTVLLMLNSDTITLPILSPPADFKNRSPKSDRSSSQECSALIYIKGLLVSTMQKCILLIRVLVLNFLHCSKAVFENHTKSSIFSPSYKAKTKCSHRFR 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5801730 5805104 + Lsi02G006480.1 Lsi02g00648 655390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00648 710 SMART serkin_6 349 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00648 710 Gene3D - 132 239 IPR038408 -
Lsi02g00648 710 Gene3D - 21 123 IPR038408 -
Lsi02g00648 710 ProSiteProfiles Protein kinase domain profile. 349 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00648 710 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 7 645 - -
Lsi02g00648 710 Pfam Protein kinase domain 351 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00648 710 Gene3D Transferase(Phosphotransferase) domain 1 425 625 - -
Lsi02g00648 710 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Lsi02g00648 710 ProSiteProfiles Gnk2-homologous domain profile. 130 239 IPR002902 -
Lsi02g00648 710 CDD STKc_IRAK 355 620 - -
Lsi02g00648 710 MobiDBLite consensus disorder prediction 248 277 - -
Lsi02g00648 710 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Lsi02g00648 710 Pfam Salt stress response/antifungal 145 235 IPR002902 -
Lsi02g00648 710 MobiDBLite consensus disorder prediction 253 268 - -
Lsi02g00648 710 Gene3D Phosphorylase Kinase; domain 1 313 424 - -
Lsi02g00648 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Lsi02g00648 710 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Lsi02g00648 710 SUPERFAMILY Protein kinase-like (PK-like) 333 619 IPR011009 -
Lsi02g00648 710 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 645 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00385 Lsi-Chr1:3351042 Lsi02g00648 Lsi-Chr2:5801730 0 dispersed
Lsi01g00396 Lsi-Chr1:3401529 Lsi02g00648 Lsi-Chr2:5801730 6.86E-130 dispersed
Lsi02g00644 Lsi-Chr2:5766332 Lsi02g00648 Lsi-Chr2:5801730 2.78E-170 dispersed
Lsi02g00648 Lsi-Chr2:5801730 Lsi01g00383 Lsi-Chr1:3344927 0 dispersed
Lsi02g00648 Lsi-Chr2:5801730 Lsi02g00650 Lsi-Chr2:5821030 1.03E-42 proximal
Lsi02g00648 Lsi-Chr2:5801730 Lsi02g00651 Lsi-Chr2:5823408 2.19E-22 proximal
Lsi01g00381 Lsi-Chr1:3337854 Lsi02g00648 Lsi-Chr2:5801730 1.35E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83364 PF00069 Pkinase 2.40E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00648 - - csv:105434457 957.207