Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00650 ATGGAGAAGAACTTGGAAATCAGTTCAACTTACACATTAACTGGTTGTTGTACATGTTTAGAAGTGGATGACACTGCAGATTTGGAAACTTTGGTATTTGACATCAATACTATAAGAACTGCAACAGATGACTTCTCAGATGAAAATTATATTGGACAAGGTAGATTTGGAGCTGTTTACAAGGGAAGCCTTGTTAATGGACAAGAAATAGCAGTGAAAATTCTCTACCACAACTCCATGGAAGGAGAGAGTGAGTTTAAGAATGAAGTCCTCTCAGTGGCTAAACTTCAACATCGGAATTTAGCTCGGCTTCTCGGCTTCTACCTCCACGAAGACGAAAGGGTTCTCGTGTTCGAGTTTGTGCAAAACTTAAGTCTTGATAAATTCATATTTGATCCATTGAAAGGTCAAGATTTGGATTGGGGAACTCGCTACAAAATCATTGAAGGCGTTGCTAGAGGCCTTGTTTATCTTCACCAAGATTCTCAAATTAAAGTCGTTATTCATCGAGATCTCAAAGCTACAAATATATTATTAGATGCAGAAAAGAATCCTAAAATTTCTGATTTTTGCACGGTATGGAGAAACTGGAGAGCAGGAACAGCACTGAATGTTGTAGATCCCATATTGAGAGGTGGCTCAAGCAATGAAATAAAGAAATGTATCAACATTGGGTTGCTTTGTGCTCAAGAAAATAAATCTGACAGGCCAACTATGGAAACTGTACTTCTCATGCTTAATAGTGACACAATCACTCTACCAATACTTTCTCCACTAGGTGATTACATGAATAGGAGACCCAAATCAGACATGTCTTCTTCACAAGAGAGGTCTGATTCTCATGTGATAGAGATGGAATGA 861 38.21 MEKNLEISSTYTLTGCCTCLEVDDTADLETLVFDINTIRTATDDFSDENYIGQGRFGAVYKGSLVNGQEIAVKILYHNSMEGESEFKNEVLSVAKLQHRNLARLLGFYLHEDERVLVFEFVQNLSLDKFIFDPLKGQDLDWGTRYKIIEGVARGLVYLHQDSQIKVVIHRDLKATNILLDAEKNPKISDFCTVWRNWRAGTALNVVDPILRGGSSNEIKKCINIGLLCAQENKSDRPTMETVLLMLNSDTITLPILSPLGDYMNRRPKSDMSSSQERSDSHVIEME 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5821030 5822622 + Lsi02G006500.1 Lsi02g00650 655392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00650 286 ProSiteProfiles Protein kinase domain profile. 45 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00650 286 MobiDBLite consensus disorder prediction 270 286 - -
Lsi02g00650 286 Gene3D Phosphorylase Kinase; domain 1 12 120 - -
Lsi02g00650 286 SMART serkin_6 45 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00650 286 Gene3D Transferase(Phosphotransferase) domain 1 194 254 - -
Lsi02g00650 286 SUPERFAMILY Protein kinase-like (PK-like) 35 258 IPR011009 -
Lsi02g00650 286 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 28 191 - -
Lsi02g00650 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lsi02g00650 286 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Lsi02g00650 286 Pfam Protein kinase domain 46 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00650 286 MobiDBLite consensus disorder prediction 262 286 - -
Lsi02g00650 286 Gene3D Transferase(Phosphotransferase) domain 1 122 193 - -
Lsi02g00650 286 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 193 275 - -
Lsi02g00650 286 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 28 191 - -
Lsi02g00650 286 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 193 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00650 Lsi-Chr2:5821030 Lsi01g00396 Lsi-Chr1:3401529 7.94E-66 dispersed
Lsi02g00648 Lsi-Chr2:5801730 Lsi02g00650 Lsi-Chr2:5821030 1.03E-42 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83365 PF00069 Pkinase 5.80E-28 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00650 - - csv:105434457 293.123