Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00655 ATGGCGTGGCCTCACAATTTGAAGATTTTGTGGAGCAACAAAACAATGGGTGGTTCAAGATTTTTAAGTTCCATTACTCTGAGTTTGTTACTGTTGGCACTGATTGACCATCCTCTGGCATTTGCTCAGCCCAGATTCTTGGGCTATACATGCCTGGACGGAGGCAATAACAACCGCACAACTGACGGCGCCGCCTACAAAGCCAATCTGAACCACCTCCTCTCCACCCTCACCACCGATCATCAAATCGACTATGGCTTCTACAACTTCTCTTACGGCGCCGGCGAAAACAGAGCAAACGTGATTGGACTCTGCAGAGGGGACATTTCGGCTGAGACTTGCCGGAAATGCCTCAACGACTCCGGAGATCTTCTCCCTTTCCGGTGTCCGATCCAAAGGGAAGCGATTGGTTGGCACCAAAACTGCATGCTCCGTTACTCCGACCGCCCCATCCTCGGCTCCATGGAACTTTCACCGTCTATTCCTCTGTCGTATCTGTTCGATGCGTCGGATCCGGAAGGGTTCACTCAGGCCGCTAGGAAGCTGATTGTGAGTCTCATAGGTCAGGCCTCCGCCGGCGATTCCCGTGTGAAATTTTCGACTGGAAACGCTTCTCTTCCGGATTTGCCCACAATTTATGCTTTTGCCCAGTGCACCCCGGATTTGTCCCGGCGGCAGTGCAACGAGTGCTTGGCTGCAGCTCTGGCAAAAATCCAAGAGTGCTGTGATGGAAAGCTTGCAGGCAGAGTTCTTACTCCCAGTTGTCAGTTGCGATATGGGACTTACTCTCTCATTCAATCGCTGCCGTCGCCATCGCCGTCGCCTTCCCCTATTTCTCCTCCTCTTAACAGAACTACCCACCATGGAAATAAAAGTAACCACTCCGGAACTTTCATAGGTGTGATTGTGCCGATTGCTGTTGTTGTAGTTTTACTACTGACGATCATAATCTACATGGGTCTGAGAAAAAGCAGTCCAAAGACCGATGTAGAAGAATCGACAGGTCGAACAGAGGAAGAAATGACGACAATGGGGTTTGTGCAGTTCGATTTCGACACCATTAGAATGGCAACAGATGAATTTTCAGATGAAAATAAAGTTGGGGAAGGTGGGTTTGGAGCTGTTTACAAGGGGAAGCTTTCAAACGGACGAATCATAGCAGTGAAACGGCTGTCTCAAGCTTCAAGGCAGGAAGATGTTGAGTTTAAGAACGAACTCGTTTTGGTATCTAAGCTTCACCATCGAAATTTAGTTAAGCTTTTAGGTTTCTCCTTCAAAGAAAATGAAAAGTTTCTCATTTATGAGTTCTTGCACAATGGAAGTCTTCAAAATTGCATTTTCGATCCTCTCAAGCGTGAAAGTTTAGATTGGGCAACACGCTACAAAATTATAGAAGGCATTACTCGAGGACTTGTTTATCTTCACGAAGATTCTCGAATCAAAATTATTCATCGAAATCTAAAAGCAAGTAACATTTTATTAGATGCTCAAATGAATGCTAAAATTTCAGATTTTGGTATTGCGAGACTATTCGCATCTGAACAAACACACGGTGATACATCTACCATCATTGGAACTTTTGGATATATGGCTCCTGAATATGTAAGACATGGGCATCTCTCATCAAAGTTAGACGTCTTCAGCTTTGGTGTTTTGGTTTTAGAGATTGTGACCGGACAAAAAAATAACCGAATTCGTAACAACATTGAGAATATAAACGACCTTCTTATAAGCTACACATGGAGAAATTGGAGGGAAGGAACACCATTGAATATTGTAGATCCTTGTATTGAAATTCAAGGGGAGATGAGAAATGAAGTGACAAGATGCATCCATATTGGGCTACTTTGCGTTCAAGAAAAGGTTGATGAAAGGCCAAAAATGACTAATGTACTTCTCATGCTTATTGGTGATTTGACTAATATTCCCAAACCCTCCCAGCCTTCTTTCTTTATGAATGATAGAACCCAACAAAATTACTCTTAG 1986 44.16 MAWPHNLKILWSNKTMGGSRFLSSITLSLLLLALIDHPLAFAQPRFLGYTCLDGGNNNRTTDGAAYKANLNHLLSTLTTDHQIDYGFYNFSYGAGENRANVIGLCRGDISAETCRKCLNDSGDLLPFRCPIQREAIGWHQNCMLRYSDRPILGSMELSPSIPLSYLFDASDPEGFTQAARKLIVSLIGQASAGDSRVKFSTGNASLPDLPTIYAFAQCTPDLSRRQCNECLAAALAKIQECCDGKLAGRVLTPSCQLRYGTYSLIQSLPSPSPSPSPISPPLNRTTHHGNKSNHSGTFIGVIVPIAVVVVLLLTIIIYMGLRKSSPKTDVEESTGRTEEEMTTMGFVQFDFDTIRMATDEFSDENKVGEGGFGAVYKGKLSNGRIIAVKRLSQASRQEDVEFKNELVLVSKLHHRNLVKLLGFSFKENEKFLIYEFLHNGSLQNCIFDPLKRESLDWATRYKIIEGITRGLVYLHEDSRIKIIHRNLKASNILLDAQMNAKISDFGIARLFASEQTHGDTSTIIGTFGYMAPEYVRHGHLSSKLDVFSFGVLVLEIVTGQKNNRIRNNIENINDLLISYTWRNWREGTPLNIVDPCIEIQGEMRNEVTRCIHIGLLCVQEKVDERPKMTNVLLMLIGDLTNIPKPSQPSFFMNDRTQQNYS 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5852260 5854901 + Lsi02G006550.1 Lsi02g00655 655397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00655 661 Pfam Protein kinase domain 362 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00655 661 ProSiteProfiles Protein kinase domain profile. 361 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00655 661 Gene3D Transferase(Phosphotransferase) domain 1 437 643 - -
Lsi02g00655 661 SUPERFAMILY Protein kinase-like (PK-like) 339 635 IPR011009 -
Lsi02g00655 661 ProSiteProfiles Gnk2-homologous domain profile. 157 264 IPR002902 -
Lsi02g00655 661 CDD STKc_IRAK 367 635 - -
Lsi02g00655 661 Pfam Salt stress response/antifungal 172 262 IPR002902 -
Lsi02g00655 661 Pfam Salt stress response/antifungal 51 148 IPR002902 -
Lsi02g00655 661 Gene3D - 167 263 IPR038408 -
Lsi02g00655 661 Gene3D - 49 150 IPR038408 -
Lsi02g00655 661 ProSiteProfiles Gnk2-homologous domain profile. 48 151 IPR002902 -
Lsi02g00655 661 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Lsi02g00655 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 61 657 - -
Lsi02g00655 661 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 61 657 - -
Lsi02g00655 661 MobiDBLite consensus disorder prediction 268 290 - -
Lsi02g00655 661 Gene3D Phosphorylase Kinase; domain 1 323 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00655 Lsi-Chr2:5852260 Lsi01g00383 Lsi-Chr1:3344927 0 dispersed
Lsi02g00654 Lsi-Chr2:5844675 Lsi02g00655 Lsi-Chr2:5852260 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83367 PF00069 Pkinase 6.00E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00655 - - csv:101215640 968.763