Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00656 ATGGGGTCGCCTGAAATTACGGATTGGGTGTTCGATTACGGTGTTATTGAGGACATTCCTGTCCCCGGTGGTGACCTACCTTCCCTGGATCTTCCCTCTTTCACTTTGCCTTCTTGCGATTTCACTGCCTCCTTAAGGATGAGCTCTGGATCAAATGCATTTGAGTCCAAGGCACATAAAGAAAAAATGAGGAGGGAAAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCGGAAGCTGAAGGAGTCTAATGAGAGTTCTTTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTACGAAACGAAAAACAGAAGCTGAAAGAAGCAAAAGACAACCTTGAACAGAAAATGAAGGCCTTCAATACACAGCCAAGCTTCTTGCCTCACCCTCCTGCAATTCCTGCTGCATTTTCTTCTCCAAATCAGGTTGTTGGGGGGAAATTGGTACCTGTGATTGGATATTCAGGAGTATCCATGTGGCAGTTTATGCCTCCGGGTGCCATTGATACATCGCAAGACCACGTTCTTCGGCCGCCAGTCGCCTGA 642 45.17 MGSPEITDWVFDYGVIEDIPVPGGDLPSLDLPSFTLPSCDFTASLRMSSGSNAFESKAHKEKMRREKLNDRFLELNSILNHGRPPKIDKSAILGDAVRMIIQLRDEARKLKESNESSLEKINEMKAEKNELRNEKQKLKEAKDNLEQKMKAFNTQPSFLPHPPAIPAAFSSPNQVVGGKLVPVIGYSGVSMWQFMPPGAIDTSQDHVLRPPVA 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5857614 5860645 - Lsi02G006560.1 Lsi02g00656 655398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00656 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 115 IPR036638 GO:0046983
Lsi02g00656 213 PANTHER BHLH TRANSCRIPTION FACTOR 46 213 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lsi02g00656 213 Gene3D - 55 125 IPR036638 GO:0046983
Lsi02g00656 213 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 46 213 - -
Lsi02g00656 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 103 IPR011598 GO:0046983
Lsi02g00656 213 CDD bHLH_AtILR3_like 57 132 - -
Lsi02g00656 213 SMART finulus 58 109 IPR011598 GO:0046983
Lsi02g00656 213 Coils Coil 100 155 - -
Lsi02g00656 213 Pfam Helix-loop-helix DNA-binding domain 56 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00656 Lsi-Chr2:5857614 Lsi10g00160 Lsi-Chr10:2566969 7.68E-65 dispersed
Lsi02g00656 Lsi-Chr2:5857614 Lsi04g01245 Lsi-Chr4:19399132 4.70E-64 wgd
Lsi02g00656 Lsi-Chr2:5857614 Lsi05g00630 Lsi-Chr5:7771313 5.68E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24771 PF00010 HLH 5.40E-09 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00656 - - csv:101208894 388.267