Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00673 ATGAATCTTCTTCCTATGCCTAAACGGGCTGTCTTCTTCATTTCGTTGTTTTTTGTAATATTTGTTGGCAGCCATTTTAGCGTTGGCCTTGAGAATCCGAATTCTACCATTCAAATCATCAAAGATGGAGGTCGCTTGGTATCCAACGACAACAATTTCGCTCTTGGATTCTTCAGTCCCAATAATTCCACCACTCGCCGTTATGTCGGAATTTGGTACAATAAAATTCCTCTAACCCTCGTTTGGGTTGCCAATAGAAACCAACCCCTAAACGACACATCAGGAACTTTAGCCCTCGACCGCCATGGAAACGTCGTCGTTTTCACCCCCACACAAACCATCTCTCTTTGGTCTACAAACACTACCATCCAATCAAACGACGACGTGTCGATTGAGCTTTGGAATACGGGAAATCTCGCCCTGATTCAACGACAAAGCCAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTATTTCTTCCTTACATGAAATTGGGGTTGAACCGGCGGACCGGGTTTAGCTGGTTCCTAACTTCATGGAAGGCGCAGGACGATCCGGGAACTGGGAAGTTCAGTTGCCGGATAGACCCGACAGGGTATCCGCAATTAATTTTGTACAATGGGAATGTTCCACGGTGGCGGGTCGGATCATGGACGGGGCAGAAATGGTCTGGAGTACCTGAAATGACAAGGTCATTTATATTCAACACAACGTACATCGACAACACACAAGAGATTTCCATAATGGACGCTGTCACAATCGACACGGTTTTAACGAGCATGACTCTAGACGAATCCGGTTTGTTGCATCGGTCCAGGTGGAATGAACAAGAACAAAAGTGGAGCGATTACTGGGCGGCTCCAACCGAGTGGTGCGATAGCTACAACCGATGCTATCCGAACAGTAACTGCGACCAGTACGACACAGAGCAATTCTATTGCAAGTGTTTGCCTGGGTTCGAACCACGATCGAACCAGAGTTGGTTATTGAGAGAACCTTCAGGTGGGTGCATCAGGAAGAGGCCAAACGCCATGTGTCGTAGTGGAGAGGGTTTTGTGAAGGTGCCACGTGTGAAGGTGCCGGATACGTCGACGGCACGTGCGGATATGAGTATGAGTTTAGAAGCATGTGCACAAGCATGTGTAAATGATTGTAACTGTACGGCTTACACGAGCGCAAATGAGATGACGGGGAGCGGGTGCTTGACGTGGTATGGAGATTTGATAGACACGCGAACCTTTGCCAATACGGGTCAAGATCTATATGTAAGAGTTGATGCTATTGAATTAGCTCAATATGCACAAAATTCAAATCCTCATCCAACAACAAAGAAGAAGGTGATAGTAATTGTTGTCGTGTCTTTTGTCGCATTGGTGTTACTCGTGATCTCGCTAATTTGTTTATGGAAAATGATTAGAAAAAGAAAGGAGAGATCGGCGAGTTTATCTAATAACATTGGGAACACTCCAAATCCTAAGGAATTTGATGAAAGTAGTACAAATTCAGATTTGCCTATATTTGATTTGTTGACCATAACAAAGGCAACCGACGATTTTTCATTTAATAACAAGCTTGGAGAAGGTGGCTTTGGCGTAGTTTATAAGGGCAAGCTTACAAATGGAAAGGAAATTGCAGTTAAACGGTTGGCCAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACTTTAATAGCAAAGCTTCAACATAGAAACCTCGTCAGAATTTTAGGGTACTGTGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTGCCAAACAAAAGCGTGGACTATTTCATCTTTGATGATAGCAAGAGGGCTTTGTTGAATTGGAAAAAGCGTTTTGAAATTATATGTGGCATCGCACGAGGGATCTTATATCTCCATCGAGATTCTAGATTGAAAATCATTCATCGAGATTTGAAGGCGAGCAATATACTACTAGATGCGGATTTGAATCCCAAAATTGCAGATTTTGGCATGGCAAGGATATTTGGCCAAGATCAAATTCAAGCAAACACAAATCGCATCGTGGGAACGTATGGTTATATGTCACCAGAGTATGCAATGGAAGGCCTATTTTCAGTGAAATCTGATGTTTATAGCTTTGGAGTTTTGGTGCTAGAAGTAGTTACAGGCAAAAAGAACACTGGCTGTGTATCCAACTATGTAAATTTGGTTGGACAAGTTTGGGAGTTCTGGCAATTGGATAATGCAATGGAATTAGTGGACTCAAGTTTGGAAGAAGAATCAAGTTGTGAATATGAAATCATGAGATGCCTCCAAATTGGGCTATTATGTGTGCAGGAGGATCCGACTTACCGTCTGATCATGTCGAATGTCATTTTCATGTTGGAGAATCAAGTGAGTCTTCCTTCTCCAAAGAAACCTGCTTTCATTTTAAATAGGAAAAGCAACCATAGAGATCCATCCACTAGTACTGAAGGAACCAACTCTAGTACTACTGAGGGAGCCAACTCTGTAAATGATCTAACAATTTCCATTATCGATGCTCGTTAA 2538 42.47 MNLLPMPKRAVFFISLFFVIFVGSHFSVGLENPNSTIQIIKDGGRLVSNDNNFALGFFSPNNSTTRRYVGIWYNKIPLTLVWVANRNQPLNDTSGTLALDRHGNVVVFTPTQTISLWSTNTTIQSNDDVSIELWNTGNLALIQRQSQKVIWQSFDYPSHVFLPYMKLGLNRRTGFSWFLTSWKAQDDPGTGKFSCRIDPTGYPQLILYNGNVPRWRVGSWTGQKWSGVPEMTRSFIFNTTYIDNTQEISIMDAVTIDTVLTSMTLDESGLLHRSRWNEQEQKWSDYWAAPTEWCDSYNRCYPNSNCDQYDTEQFYCKCLPGFEPRSNQSWLLREPSGGCIRKRPNAMCRSGEGFVKVPRVKVPDTSTARADMSMSLEACAQACVNDCNCTAYTSANEMTGSGCLTWYGDLIDTRTFANTGQDLYVRVDAIELAQYAQNSNPHPTTKKKVIVIVVVSFVALVLLVISLICLWKMIRKRKERSASLSNNIGNTPNPKEFDESSTNSDLPIFDLLTITKATDDFSFNNKLGEGGFGVVYKGKLTNGKEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSVDYFIFDDSKRALLNWKKRFEIICGIARGILYLHRDSRLKIIHRDLKASNILLDADLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEVVTGKKNTGCVSNYVNLVGQVWEFWQLDNAMELVDSSLEEESSCEYEIMRCLQIGLLCVQEDPTYRLIMSNVIFMLENQVSLPSPKKPAFILNRKSNHRDPSTSTEGTNSSTTEGANSVNDLTISIIDAR 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6041239 6044783 - Lsi02G006730.1 Lsi02g00673 655415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00673 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Lsi02g00673 845 ProSiteProfiles Bulb-type lectin domain profile. 31 154 IPR001480 -
Lsi02g00673 845 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Lsi02g00673 845 SUPERFAMILY Protein kinase-like (PK-like) 497 792 IPR011009 -
Lsi02g00673 845 Pfam PAN-like domain 348 413 IPR003609 -
Lsi02g00673 845 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Lsi02g00673 845 Pfam Domain of unknown function (DUF3403) 794 845 IPR021820 GO:0004674
Lsi02g00673 845 MobiDBLite consensus disorder prediction 808 831 - -
Lsi02g00673 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 188 IPR036426 -
Lsi02g00673 845 Gene3D - 34 154 IPR036426 -
Lsi02g00673 845 CDD PAN_AP_plant 349 427 - -
Lsi02g00673 845 MobiDBLite consensus disorder prediction 811 831 - -
Lsi02g00673 845 Pfam Protein tyrosine and serine/threonine kinase 522 788 IPR001245 GO:0004672|GO:0006468
Lsi02g00673 845 SMART blect_4 37 157 IPR001480 -
Lsi02g00673 845 Pfam D-mannose binding lectin 79 183 IPR001480 -
Lsi02g00673 845 PIRSF SRK 3 845 IPR024171 GO:0004674
Lsi02g00673 845 SMART serkin_6 521 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00673 845 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 48 839 - -
Lsi02g00673 845 SMART ntp_6 349 427 IPR003609 -
Lsi02g00673 845 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Lsi02g00673 845 ProSiteProfiles EGF-like domain profile. 290 328 IPR000742 -
Lsi02g00673 845 CDD B_lectin 38 157 IPR001480 -
Lsi02g00673 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 48 839 - -
Lsi02g00673 845 Gene3D Phosphorylase Kinase; domain 1 495 596 - -
Lsi02g00673 845 Gene3D Transferase(Phosphotransferase) domain 1 597 802 - -
Lsi02g00673 845 CDD STKc_IRAK 527 793 - -
Lsi02g00673 845 ProSiteProfiles Protein kinase domain profile. 521 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00673 Lsi-Chr2:6041239 Lsi02g00676 Lsi-Chr2:6059594 0 dispersed
Lsi02g00673 Lsi-Chr2:6041239 Lsi02g00674 Lsi-Chr2:6046783 4.37E-37 tandem
Lsi01g00372 Lsi-Chr1:3277497 Lsi02g00673 Lsi-Chr2:6041239 0 wgd
Lsi02g00673 Lsi-Chr2:6041239 Lsi04g01264 Lsi-Chr4:19862104 1.00E-123 wgd
Lsi02g00673 Lsi-Chr2:6041239 Lsi05g00670 Lsi-Chr5:8832092 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83368 PF07714 PK_Tyr_Ser-Thr 3.60E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00673 - - cmo:103485800 1385.93