Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00676 ATGAATCATCTTCCTCCTAAAAGGGCCGTCTTCCTCATTTCGTTGATTTTAGTAATATTTGTTGGCAGCCATTTTAGCGTTGGCCTTGAGAATTCGAATTCTACCCTTCAAATCATCAAAGATGGAGATCGCTTGGTATCCAGCAACAACAATTTCGCTCTTGGATTCTTCAGTTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTACAATAAAATTCCTCAACTAACCCTCGTTTGGGTTGCCAATAGAAATCAACCCCTCAACGACACCACAGGAACCTTAGCCCTCGACCGCCTTGGAAACGTCGTCGTTTTCACCCCCACACGAGCCATATCTCTTTGGTCTACAAATACTACCATCCAATCAAACAACGACGTGTCGGTTGAGCTTCGAAATACGGGAAATCTCGCCTTGGTTGAACAACAAAGCCAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCCTTCTTCCCTACATGAAATTGGGGTTGAACCGGCGAACCGGTTTCAGCTGGTTCCTAACTTCATGGAAAGCGCATGACGATCCGGGAACCGGGAACTTCAGTTGCCGGATCGACCCAACCGGGTATCCACAACTTTTTTTGATCAACGAGAATGTTCCGAAGTGGCGAGGAGGATCATGGACCGGACAAAGATGGACCGGAGTGCCTGAAATGACAAGGTCATTTATAATCAACATATCATACATCGACAACTCTGAAGAAATTTCCATAATGAACGGCGTAACGGTCGACACTGTTTTAATGAGCATGAGTCTAGACGAGTCCGGTTTGTTGCATCGGTCCACTTGGAACGAACAAGAGCAAAAGTGGATCGAGTTTTGGTCAGCCCCAATCGAGTGGTGTGATAGCTACAACCGATGCGGTCTAAACAGTAATTGCGACCCATACAACACGGAGCAGTTCCAATGCAAGTGCCTACCTGGTTTCAAACCACGGTCGGACCAGAACTGGTTCTTCAGAGATTCATCGGATGGGTGTATCAGGAAGAGGTTGAACGCCACGTGTCAAAGTGGAGAGGGTTTTGTAAAGGTGTCACGTGTGAAGGTGCCCGATACATCGATCGCACATGTGGATAAGAGTATGAGTTTAGAAGCGTGTGAAAAAGCGTGTTTAAATAATTGTAACTGTACAGCTTACACAAGTGCAAATGAGATGACGGGGACCGGGTGCATGATGTGGCATGGAGATTTGGTTGACACGCGGACCTATGCCAACGTGGGCCAAGATCTATATGTAAGAGTTGATGCTATTGAATTAGCTCAATATTCACAAAATTCAAATCGCCATCCAACAAAGAAGGTGATAGCAATTGTTGTTGTATCTTTTGTTGCATTGGTACTACTCTTGACTTCGCTAATTTATTTATGGGAAACAACTAGAAAAAGAAGGGAGAGATCGACAAGCTTATCTCTTTACTTTGGAGAATCTCCAAATCCAAAGGAATTTGATGAAAGTAGAACAAGTTCAGATTTGCCTGTATTTGACTTGTTGACCATAGCAAAGGCAACCGACAATTTCTCATTTAATAACAAGCTTGGAGAAGGTGGCTTTGGCGCAGTTTATAAGGGCAAGCTTACAAATGGAGAAGAAATTGCAGTTAAAAGGTTGGCTAAGAATTCAGGGCAGGGAGTTGGAGAGTTCAAGAATGAAGTTACATTAATTGCAAAGCTTCAACATAGAAACCTGGTCAGAATTTTAGGGTACTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGGAAGAGGGTTTTCCTGAATTGGAATAAACGTTTTGAAATCCTATGTGGCATCGCACGAGGGATTTTATATCTTCATCAAGATTCTAGATTAAAAATCATTCATCGAGATTTGAAGGCGAGCAATATACTATTGGATGCTGATTTGAATCCTAAAATCGCAGATTTTGGCATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAATACAAATCGCATTGTGGGAACATACGGTTATATGTCACCAGAGTACGCAATGGAAGGCCTATTTTCAATAAAATCAGATGTATATAGCTTTGGAGTTTTGGTACTAGAGATGATTACAGGCAAAAAGAATACCAACTATGATTCCTCCTACTTAAACTTGGTTGGACATATTTGGGAGCTCTGGAAATTGGACAATGCAATGGAATTAGTGGATCCAAGTTTCGAAGAATCAAGTTGTGGATATGAAATCATGAGATGCGTCCAAATTGGTCTATTATGTGTCCAAGAGGATCCGACAGATCGTCCGACCATGTCGACTGTCATCTTCATGTTGGGTAATGAAGTCAATCTTCCTTCTCCAAAGAAACCTGCTTTTATTTTAAAGAGAAAATACTACAGTGGAGATCCATCTACTAGTACTGATGGAGCTAACTCTGTAAATGATTTAACAATTTCCATAATCAATGCTCGTTAA 2505 41.6 MNHLPPKRAVFLISLILVIFVGSHFSVGLENSNSTLQIIKDGDRLVSSNNNFALGFFSFNNSTTRRYVGIWYNKIPQLTLVWVANRNQPLNDTTGTLALDRLGNVVVFTPTRAISLWSTNTTIQSNNDVSVELRNTGNLALVEQQSQKVIWQSFDYPSHVLLPYMKLGLNRRTGFSWFLTSWKAHDDPGTGNFSCRIDPTGYPQLFLINENVPKWRGGSWTGQRWTGVPEMTRSFIINISYIDNSEEISIMNGVTVDTVLMSMSLDESGLLHRSTWNEQEQKWIEFWSAPIEWCDSYNRCGLNSNCDPYNTEQFQCKCLPGFKPRSDQNWFFRDSSDGCIRKRLNATCQSGEGFVKVSRVKVPDTSIAHVDKSMSLEACEKACLNNCNCTAYTSANEMTGTGCMMWHGDLVDTRTYANVGQDLYVRVDAIELAQYSQNSNRHPTKKVIAIVVVSFVALVLLLTSLIYLWETTRKRRERSTSLSLYFGESPNPKEFDESRTSSDLPVFDLLTIAKATDNFSFNNKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDSFIFDERKRVFLNWNKRFEILCGIARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSIKSDVYSFGVLVLEMITGKKNTNYDSSYLNLVGHIWELWKLDNAMELVDPSFEESSCGYEIMRCVQIGLLCVQEDPTDRPTMSTVIFMLGNEVNLPSPKKPAFILKRKYYSGDPSTSTDGANSVNDLTISIINAR 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6059594 6063066 - Lsi02G006760.1 Lsi02g00676 655418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00676 834 Gene3D - 30 154 IPR036426 -
Lsi02g00676 834 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 45 828 - -
Lsi02g00676 834 SMART serkin_6 519 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00676 834 PIRSF SRK 2 834 IPR024171 GO:0004674
Lsi02g00676 834 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 45 828 - -
Lsi02g00676 834 CDD PAN_AP_plant 347 427 - -
Lsi02g00676 834 SMART blect_4 36 157 IPR001480 -
Lsi02g00676 834 ProSiteProfiles Bulb-type lectin domain profile. 30 154 IPR001480 -
Lsi02g00676 834 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Lsi02g00676 834 SUPERFAMILY Protein kinase-like (PK-like) 495 788 IPR011009 -
Lsi02g00676 834 Gene3D Phosphorylase Kinase; domain 1 493 594 - -
Lsi02g00676 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 188 IPR036426 -
Lsi02g00676 834 Pfam Protein tyrosine and serine/threonine kinase 520 785 IPR001245 GO:0004672|GO:0006468
Lsi02g00676 834 Pfam PAN-like domain 348 413 IPR003609 -
Lsi02g00676 834 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Lsi02g00676 834 Gene3D Laminin 294 342 - -
Lsi02g00676 834 SMART ntp_6 349 427 IPR003609 -
Lsi02g00676 834 Gene3D Transferase(Phosphotransferase) domain 1 595 796 - -
Lsi02g00676 834 CDD B_lectin 37 157 IPR001480 -
Lsi02g00676 834 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Lsi02g00676 834 Pfam D-mannose binding lectin 79 183 IPR001480 -
Lsi02g00676 834 CDD STKc_IRAK 525 788 - -
Lsi02g00676 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Lsi02g00676 834 Pfam Domain of unknown function (DUF3403) 790 834 IPR021820 GO:0004674
Lsi02g00676 834 ProSiteProfiles Protein kinase domain profile. 519 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00673 Lsi-Chr2:6041239 Lsi02g00676 Lsi-Chr2:6059594 0 dispersed
Lsi02g00674 Lsi-Chr2:6046783 Lsi02g00676 Lsi-Chr2:6059594 4.75E-46 dispersed
Lsi02g00676 Lsi-Chr2:6059594 Lsi05g00670 Lsi-Chr5:8832092 0 dispersed
Lsi10g00850 Lsi-Chr10:12508401 Lsi02g00676 Lsi-Chr2:6059594 1.42E-44 dispersed
Lsi02g00676 Lsi-Chr2:6059594 Lsi02g00677 Lsi-Chr2:6072062 0 tandem
Lsi02g02739 Lsi-Chr2:33658190 Lsi02g00676 Lsi-Chr2:6059594 2.59E-126 transposed
Lsi11g01496 Lsi-Chr11:23434550 Lsi02g00676 Lsi-Chr2:6059594 4.03E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83369 PF07714 PK_Tyr_Ser-Thr 9.30E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00676 - - cmo:103485800 1461.82