Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00677 ATGGCTCTGTTTCCAAGAAAATCAGTAGCAATCGATAGCATAAAAGCAGGGGAATCCATTATTGGCAATACCCAGATATTAGTTTCAACTGCACAGAACTTTGTGTTGGGAATCTTCAATCCCCAAGGCTCCAAATTTCAGTATTTGGGAATATGGTTCAACAACATCCCACAGACTGTCGTGTGGGTAGCAAACAGAGACAACCCACTTGTAAATTCCTCTGGTAAATTAACAGTCAACGGAGAAGGAAACATCATTCTTTTCAACGAAACAGGTGGAGTTTTATGGTCTTCCCCTTCTCCAGGATCAATGAAACAACCCGTCGCTCAGCTGCTAAACACAGGTAATTTGGTTTTAAGAGAATCTGGGTCTGAGAATTATGTGTGGCAGAGTTTTGATTACCCCTCTGATACTCTGTTACCGGGAATGAAACTGGGTTGGGACTCGAAAACCGGTCTGAACCGGAAGTTAACGTCTTGGAAAAGCTCAAACGATCCGTCGTCTGGGGCTTTCACTTACAGTATTGAAACGGATGGGCTTCCCCAATTTGTAATTCGCGAAGGACCCATCATAACTTTTCGAGGCGGCCCATGGTACGGTAATAGGTTTAGTGGAAGTGGCGCACTCAGAGATACCGCAATTTATTCACCAAAGTTCGATTATAATACTAGCGAAGCTTTCTTTTCATATGATGCTGCGGATAATCTCTCTGTAAGACTGGTATTGAATGCGGCTGGGTTATTTCAACAGTTTTATTGGGTCGATGATGGAAACTATTGGAACCCTTTGTATACAATGCCAGGAGATCGCTGCGACGTCTATGGACTTTGTGGGGATTTTGGAGTTTGTACATTTTCCCTCACAGCAGAATGTGATTGTATGGCTGGGTTTGAACCCAAATCGCCCAATGATTGGGAAAGGTTTAGATGGTCTGATGGCTGTGTTAGAAGGGACAATCGAACCTGTGGAAATGGAGAGGGATTTAAACGAATCAGCAGTGTGAAATTGCCAGATTCTTCAGGGTATTTGGTGAATGTTAATACAAGCATTGTTGATTGCGAGGCGGCGTGCTTAAACAACTGCTCTTGCTTGGCTTATGGAATAATGGAGCTTCCAACAGCCGGTTATGGTTGCGTTACCTGGTTTCATAAACTAGTGGATGTTAAATTTGTTCTTGAAAATGGACAAGATCTCTATGTGAGAGTGGCGGCTTCAGAACTTGGTAATGTGATCTCTCCTGAGATCACTGAAGGTCAGATTCAATCTCAAGAAAACGAAGTGGAAATGCCAATCTTTGATTTTACAACGATCGAGATTGCGACGAATGGTTTCTCTTTTTCAAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTTCTTGTGGACAAGAGATTGCAGTAAAGAGACTGGCAGAGGGCTCTGGCCAAGGGCAGAGTGAGTTTAAAAATGAGGTCTTGTTGATTTCACAACTTCAGCATCGAAATCTTGTCAAGCTTCTTGGTTTCTGCATTCACCAAGAAGAAACATTGCTGGTCTATGAATATATGCAAAACAAAAGTTTAGACTACTTCCTCTTCGGTTGGTGCCAAACTTGTTTCTCTCACTCTATGCTCCCTTTTGTCCAGCAGATGTTAATTCTATATTCCTTCAATTTTTCTCTTCTCAATTTAACCGTATGGACTGCGATTATTGATGCAGATAATAAGAGACGATCTTTACTCAATTGGCAAAAAAGATTGGACATCATAATTGGAATTGCTCGAGGACTTCTTTACCTTCATAGAGATTCAAGGTTGAGAATAATACATAGAGATCTCAAAGTAAGTAATATATTACTAGACAATGAAATGACTCCGAAAATTTCAGACTTCGGTATGGCACGCATGTTTGGGGAAGGTCAAACTATGACCAAAACCAAAAGAGTTGTTGGGACCTATGGTTATATGTCTCCAGAATATGCACTCGACGGATGTTTTTCATTGAAATCAGATGTATTTAGTTTTGGGGTAATTCTTTTGGAAATAGTTAGTGGTAAGAAGAATAGAGGCTTCCTCCATACCAATCATCAACTAAATCTTCTTGGACATGCATGGAAGCTTTGGGATGAAGAAAATGCTTTGGAGTTAATGGATGAAACATTGGAGGATGAATTCCAACCTTCTCTTGCCCTGCGATGCATTCAAGTAGGGCTTTTGTGTGTTCAACAGAACCCTGATGAAAGACCAACTATGTGGTCAGTACTTTCAATGTTGGAGAGTGAAAACGTATTGCTATTTGATCCTAAACAACCTGGATTTTACATGGAAAGAATGTTTTCTAAGCACGATAAATTATCGGCCGAAACCTCCACTTCCAATGAAGTGACAGTTACATCGCTACATGGTCGAGGCCAAGAAGTGGCTTCTGTTGCCATTAAGATTGAAACCTCCGACCTGCATCTTGATCGTGATATTCTTCAAGCTAACCTACGTAAGGTTGCTTGGACATTTTCTTTTGATGTGGCATAA 2520 41.11 MALFPRKSVAIDSIKAGESIIGNTQILVSTAQNFVLGIFNPQGSKFQYLGIWFNNIPQTVVWVANRDNPLVNSSGKLTVNGEGNIILFNETGGVLWSSPSPGSMKQPVAQLLNTGNLVLRESGSENYVWQSFDYPSDTLLPGMKLGWDSKTGLNRKLTSWKSSNDPSSGAFTYSIETDGLPQFVIREGPIITFRGGPWYGNRFSGSGALRDTAIYSPKFDYNTSEAFFSYDAADNLSVRLVLNAAGLFQQFYWVDDGNYWNPLYTMPGDRCDVYGLCGDFGVCTFSLTAECDCMAGFEPKSPNDWERFRWSDGCVRRDNRTCGNGEGFKRISSVKLPDSSGYLVNVNTSIVDCEAACLNNCSCLAYGIMELPTAGYGCVTWFHKLVDVKFVLENGQDLYVRVAASELGNVISPEITEGQIQSQENEVEMPIFDFTTIEIATNGFSFSNKIGEGGFGPVYKGKLSCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHQEETLLVYEYMQNKSLDYFLFGWCQTCFSHSMLPFVQQMLILYSFNFSLLNLTVWTAIIDADNKRRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMTPKISDFGMARMFGEGQTMTKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFLHTNHQLNLLGHAWKLWDEENALELMDETLEDEFQPSLALRCIQVGLLCVQQNPDERPTMWSVLSMLESENVLLFDPKQPGFYMERMFSKHDKLSAETSTSNEVTVTSLHGRGQEVASVAIKIETSDLHLDRDILQANLRKVAWTFSFDVA 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6072062 6076264 - Lsi02G006770.1 Lsi02g00677 655419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00677 839 Pfam PAN-like domain 322 388 IPR003609 -
Lsi02g00677 839 CDD B_lectin 20 135 IPR001480 -
Lsi02g00677 839 Pfam S-locus glycoprotein domain 193 301 IPR000858 GO:0048544
Lsi02g00677 839 SUPERFAMILY Protein kinase-like (PK-like) 427 774 IPR011009 -
Lsi02g00677 839 Pfam Protein tyrosine and serine/threonine kinase 445 754 IPR001245 GO:0004672|GO:0006468
Lsi02g00677 839 SMART ntp_6 323 402 IPR003609 -
Lsi02g00677 839 Gene3D Phosphorylase Kinase; domain 1 409 519 - -
Lsi02g00677 839 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 570 796 - -
Lsi02g00677 839 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 407 - -
Lsi02g00677 839 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 415 531 - -
Lsi02g00677 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Lsi02g00677 839 ProSiteProfiles Protein kinase domain profile. 444 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00677 839 CDD PAN_AP_plant 319 403 - -
Lsi02g00677 839 ProSiteProfiles Bulb-type lectin domain profile. 11 132 IPR001480 -
Lsi02g00677 839 CDD STKc_IRAK 450 756 - -
Lsi02g00677 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 166 IPR036426 -
Lsi02g00677 839 Pfam D-mannose binding lectin 59 161 IPR001480 -
Lsi02g00677 839 Gene3D - 8 132 IPR036426 -
Lsi02g00677 839 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 570 796 - -
Lsi02g00677 839 SMART serkin_6 444 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00677 839 SMART blect_4 18 135 IPR001480 -
Lsi02g00677 839 Gene3D Transferase(Phosphotransferase) domain 1 564 763 - -
Lsi02g00677 839 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 407 - -
Lsi02g00677 839 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 415 531 - -
Lsi02g00677 839 ProSiteProfiles PAN/Apple domain profile. 322 403 IPR003609 -
Lsi02g00677 839 PIRSF SRK 564 800 IPR024171 GO:0004674
Lsi02g00677 839 PIRSF SRK 411 541 IPR024171 GO:0004674
Lsi02g00677 839 PIRSF SRK 1 419 IPR024171 GO:0004674
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00677 Lsi-Chr2:6072062 Lsi02g00681 Lsi-Chr2:6103145 0 dispersed
Lsi02g00676 Lsi-Chr2:6059594 Lsi02g00677 Lsi-Chr2:6072062 0 tandem
Lsi02g00677 Lsi-Chr2:6072062 Lsi02g00678 Lsi-Chr2:6081863 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83370 PF07714 PK_Tyr_Ser-Thr 9.20E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00677 - - bhj:120084118 1404.04