Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00681 ATGAGGGAACTGATTTACAGGTGCAAGCTTTCGGCTTTTCTCCTTCTCTTGACGACCATCGCTCTGTTTCCAACAAAATCATATGGAAATGACAGCATAAAAGCAGGGGAATCCATCAACGGAAGTACCCAGATTTTAATTTCAGCTAAACAGAACTTCGTGTTGGGAATCTTCACTCCCCAAGGCTCCAAATTTCAGTATTTGGGAATATGGTTCAACAACATGCCACAAACTATCGTCTGGGTCGCAAACAGAAACAACCCACTTGTAACTTCCTCTGGAAAATTAGAATTCAGAAGAGGAAACATTGTTCTTCTCAACGAAACAAATGGAATTTTATGGTCTTCCATTTCTCCGGGATCAGCGAAAGAACCAGTAGCTCAGCTGCTAGATACAGGTAATTGGGTCGTAAGAGAATCTGGGTCTGAAGATTATCTATGGCAGAGTTTCGATTACCCCTCTGATACTCTGTTACCTGGGATGAAACTGGGTTGGAGCTCCAAAACCGGTCTGAACCGGAAGTTAAGATCGTGGAAAAGCTCAAACGATCCGTCGTTTGGGGACTTCATTTACAGTGTGGATCTTAATGGGCTTCCCCAATTGGTAACTCGCAAAGGACCCATCATAACGTACCGGGGCGGCCCATGGTACGGTAATAGGTTTAGTGGTAGTGCTCCTCTCAGAGATACCGCAATTTATACTCCAAAGTTCGAATATACAGCCGACGAAGTAACTTATTCATACGGTTCTACGGGCAGCTTCATTGTAAAACTTGCACTGGACGCAGCTGGAACATTGCATCAAGTTTATTGGGACGGTGGTAGAAAAGATTGGTATCCTCTGTATACATTGCCAGGGGATCGGTGCGACGACTATGGTCTCTGCGGGAATTTTGGTATTTGTACATTTTCCCTCACTCCACAATGCAATTGCATGGTTGGCTTTGAACCCAAATCGCCTGATGATTGGAAAAGGTTTAGGTGGTCAGATGGCTGCGTTAGAAAAGACAATCAAACCTGCAGTAATGGAGAAGGGTTTAAAAGAATCAGCAGTGTGAAATTGCCAGATTCTTCAGGGTATTTGGTGAATGTTAATACAAGCATTCATGACTGCGAGGATGCGTGCTTGAACAACTGCTCTTGCTTGGCTTATGGAATAATGGAACTTTCTACAGGCGGCTATGGCTGTGTCACTTGGTTTCAGAAATTGATTGATGCTAGATTTGTTCCTGAAAATGGACAGGATATCTATGTGAGAGTGGCGGCTTCTGAATTAGACTCGAGCAACAGGAAGCTTGTAATTGCTGTTAGTGTGTCTGTGGCTTCATTGATAACCTTCTTGGTTTTAGTGGTTTGTTTTATCCTGTGGCGTAGAAGGAAAGGTAGAGGTGAAATTCAAAGTCAAGAGAATGAAGTTGAGATGCCACTCTATGATTTTACTACGATTGAGATAGCCACAAATAATTTTTCTTTTTCCAATAAGATAGGGGAAGGTGGTTTTGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAATTGCAGTAAAAAGGTTGGCAGAGGGCTCTGGTCAAGGACAAAGCGAGTTCAAAAATGAGGTTTTATTGATTTCCCAACTTCAGCATCGAAATCTTGTCAAGCTGCTTGGTTTCTGCATTCATCAAGAACAAACATTACTAGTTTATGAATACATGCCAAACGAAAGTCTAGACTACTTCCTCTTTGATGATGAGAGACGATCTTTACTCAATTGGCAAAAGAGATTGGACATCATAATTGGAATAGCTCGAGGACTTCTTTATCTTCACAGAGATTCTAGGCTTAGAATCATACATCGGGATCTTAAAGTGAGTAATATATTGCTAGACAATGAAATGAATCCAAAAATTTCAGACTTTGGAATGGCACGAATGTTTCCCGAGGACCAAACTATGACAAAAACCCAAAGAGTTGTTGGGACCTTTGGCTATATGTCTCCCGAATATGCTCTCGATGGATATTTTTCGTTGAAATCAGATGTCTTTAGCTTCGGAGTTATTCTTTTGGAAATAGTAAGTGGTAAGAAGAACAGAGGCTTCTTCCATCAAGATCATCAACTTAATCTTCTTGGACATGCATGGAAGCTTTGGGATGAGGGAAATCCTTTGGAATTAATGGATCCAATATTGGAGGATGAATATGAACCTTCTGAAGCACTGCAATGCATTCAAGTAGGGCTTTTGTGTGTTCAACAGAATCCAGATGAAAGACCAACTATGTGGTCAGTACTTTCAATGTTAGAGAGTGAAAATATGTTATTATCTCCTCCTCAACGACCTGGATTTTACACAGAACGAATGGTTTCGAAGATGGATAAATCGTCGACCGAGATCTCCTCTTCCAATGAAGTGACCGTTACCCTAATACAAGGTCGTTAG 2418 41.56 MRELIYRCKLSAFLLLLTTIALFPTKSYGNDSIKAGESINGSTQILISAKQNFVLGIFTPQGSKFQYLGIWFNNMPQTIVWVANRNNPLVTSSGKLEFRRGNIVLLNETNGILWSSISPGSAKEPVAQLLDTGNWVVRESGSEDYLWQSFDYPSDTLLPGMKLGWSSKTGLNRKLRSWKSSNDPSFGDFIYSVDLNGLPQLVTRKGPIITYRGGPWYGNRFSGSAPLRDTAIYTPKFEYTADEVTYSYGSTGSFIVKLALDAAGTLHQVYWDGGRKDWYPLYTLPGDRCDDYGLCGNFGICTFSLTPQCNCMVGFEPKSPDDWKRFRWSDGCVRKDNQTCSNGEGFKRISSVKLPDSSGYLVNVNTSIHDCEDACLNNCSCLAYGIMELSTGGYGCVTWFQKLIDARFVPENGQDIYVRVAASELDSSNRKLVIAVSVSVASLITFLVLVVCFILWRRRKGRGEIQSQENEVEMPLYDFTTIEIATNNFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHQEQTLLVYEYMPNESLDYFLFDDERRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFPEDQTMTKTQRVVGTFGYMSPEYALDGYFSLKSDVFSFGVILLEIVSGKKNRGFFHQDHQLNLLGHAWKLWDEGNPLELMDPILEDEYEPSEALQCIQVGLLCVQQNPDERPTMWSVLSMLESENMLLSPPQRPGFYTERMVSKMDKSSTEISSSNEVTVTLIQGR 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6103145 6106248 - Lsi02G006810.1 Lsi02g00681 655423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00681 805 Pfam D-mannose binding lectin 78 179 IPR001480 -
Lsi02g00681 805 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 803 - -
Lsi02g00681 805 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Lsi02g00681 805 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Lsi02g00681 805 ProSiteProfiles Protein kinase domain profile. 489 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00681 805 SMART serkin_6 489 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00681 805 Gene3D Phosphorylase Kinase; domain 1 454 564 - -
Lsi02g00681 805 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Lsi02g00681 805 Gene3D - 26 150 IPR036426 -
Lsi02g00681 805 Gene3D Transferase(Phosphotransferase) domain 1 565 768 - -
Lsi02g00681 805 SMART ntp_6 341 420 IPR003609 -
Lsi02g00681 805 CDD STKc_IRAK 495 761 - -
Lsi02g00681 805 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Lsi02g00681 805 Pfam Protein tyrosine and serine/threonine kinase 490 759 IPR001245 GO:0004672|GO:0006468
Lsi02g00681 805 CDD B_lectin 39 153 IPR001480 -
Lsi02g00681 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Lsi02g00681 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 184 IPR036426 -
Lsi02g00681 805 SUPERFAMILY Protein kinase-like (PK-like) 472 783 IPR011009 -
Lsi02g00681 805 CDD PAN_AP_plant 337 421 - -
Lsi02g00681 805 Pfam PAN-like domain 340 405 IPR003609 -
Lsi02g00681 805 SMART blect_4 30 153 IPR001480 -
Lsi02g00681 805 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 803 - -
Lsi02g00681 805 PIRSF SRK 2 805 IPR024171 GO:0004674
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00677 Lsi-Chr2:6072062 Lsi02g00681 Lsi-Chr2:6103145 0 dispersed
Lsi02g00678 Lsi-Chr2:6081863 Lsi02g00681 Lsi-Chr2:6103145 0 dispersed
Lsi02g00679 Lsi-Chr2:6089580 Lsi02g00681 Lsi-Chr2:6103145 1.16E-33 dispersed
Lsi02g00681 Lsi-Chr2:6103145 Lsi05g00670 Lsi-Chr5:8832092 0 dispersed
Lsi02g00683 Lsi-Chr2:6125941 Lsi02g00681 Lsi-Chr2:6103145 7.34E-26 dispersed
Lsi02g00684 Lsi-Chr2:6133229 Lsi02g00681 Lsi-Chr2:6103145 0 dispersed
Lsi02g02789 Lsi-Chr2:34134781 Lsi02g00681 Lsi-Chr2:6103145 3.06E-138 dispersed
Lsi04g01120 Lsi-Chr4:14621727 Lsi02g00681 Lsi-Chr2:6103145 9.94E-87 dispersed
Lsi05g00675 Lsi-Chr5:8937352 Lsi02g00681 Lsi-Chr2:6103145 0 dispersed
Lsi11g00376 Lsi-Chr11:3866252 Lsi02g00681 Lsi-Chr2:6103145 1.92E-51 dispersed
Lsi02g00680 Lsi-Chr2:6097781 Lsi02g00681 Lsi-Chr2:6103145 6.34E-70 tandem
Lsi02g00681 Lsi-Chr2:6103145 Lsi02g00682 Lsi-Chr2:6110409 1.64E-06 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83372 PF07714 PK_Tyr_Ser-Thr 9.30E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00681 - - csv:105434437 1489.17