Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00693 ATGATGTCCAACGAAAAAGAAAAAAGGATATTGAAACTGACAAGGGAAGATAATTTGATTGAGGATGGTATCATCAAACTTGAAGAGCTACCTCTTTATGATTTTGAGAAGCTGGCAATGGCAACCAACAATTTTGATTCAAGTAATAAACTTGGGCAGGGTGGCTTTGGTCCAGTGTATAAGGGAAATTTGTTAAATGGACAGGAAATAGCAATAAAGAGGCTTTCAAGAGCCTCCAACCAAGGGTATGAAGAATTTATAAATGAAGTGAGGGTTATTTCTAAACTACAACATAGAAATCTTGTACGGCTCTTTGGTTGTTGCATTGAAGGAGAAGAGAAAATGTTGATATATGAATATATGCCCAACCTAAGCTTGGATGCATTCATTTTTGGCTCTCCAAAACAAGAACTTCTAGACTGGAGAAAGAGATTTAATATCATTGATGGAATTGCTCGAGGACTTCTTTATCTTCATAGAGATTCAAGATTGAAAATCATTCATAGAGATCTCAAAGCAAGTAATATTTTGTTAGACAAAGATTTGAACCCTAAAATTTCAGACTTTGGCATGGCAAGAATTTTTTGTGGCAATGAAGTCCAGGCGAACACTTTAAGAGTTGTTGGAACTTATGGATATATGTCTCCTGAGTATGCAATGCAAGGTCAATTTTCAGAGAAGTCAGATGTATTTAGCTTTGGAGTATTGTTGCTTGAAATTATTAGTGGGAGACGAAACACACAATTCTACAGCCATGAACAAGCCATAAGTTTATTGGGATTTGTATGTCTTATATAG 798 35.46 MMSNEKEKRILKLTREDNLIEDGIIKLEELPLYDFEKLAMATNNFDSSNKLGQGGFGPVYKGNLLNGQEIAIKRLSRASNQGYEEFINEVRVISKLQHRNLVRLFGCCIEGEEKMLIYEYMPNLSLDAFIFGSPKQELLDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDKDLNPKISDFGMARIFCGNEVQANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTQFYSHEQAISLLGFVCLI 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6194160 6195226 + Lsi02G006930.1 Lsi02g00693 655435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00693 265 SUPERFAMILY Protein kinase-like (PK-like) 29 256 IPR011009 -
Lsi02g00693 265 Pfam Protein tyrosine and serine/threonine kinase 48 256 IPR001245 GO:0004672|GO:0006468
Lsi02g00693 265 ProSiteProfiles Protein kinase domain profile. 45 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00693 265 Gene3D Phosphorylase Kinase; domain 1 5 120 - -
Lsi02g00693 265 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 262 - -
Lsi02g00693 265 SMART serkin_6 45 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00693 265 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 21 262 - -
Lsi02g00693 265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Lsi02g00693 265 Gene3D Transferase(Phosphotransferase) domain 1 121 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00693 Lsi-Chr2:6194160 Lsi02g00689 Lsi-Chr2:6149476 1.26E-58 dispersed
Lsi02g00691 Lsi-Chr2:6176968 Lsi02g00693 Lsi-Chr2:6194160 4.16E-164 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83378 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00693 - - bhj:120084137 456.832