Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00703 ATGGCGTCCATTAAACGCCACCGTCCTCAAGAAGACGAACACGACGCGAAAAAACCCAAATTTGCCTGTGTTTCAGATACTTCTGAGCTGAAGGAGCAGCATCCAGTGGTGCTCAACCCTGCCGACTGCGACTTGGAGAGTATCCTTCGTCTTCCTTCCTTGAGGAAATACGTTTTAGTGCGTCAAAGTGCAAAGATTATGACCTTCAGGACAAGAAGAATTGGGTTGGAGAAGCTTCTTGTCTCCTATAAAACGGCCTCGAGAAAAATATTGAAAGTGGGATTTGACGCTCTTCTTTTATGTTTAGCTTCTCTTTGGGGTTCTAGCTATTTCGAGATCGAAAGTGATGGCCTTCGAGGATCAGCTCTTTATGAGAAAGGTTTTGCATATTGCTGGTCTGGAGCCCGGACCACTGTGGGTATTACTGGTGGAAAATATTGTTTTGGTTGCAAGATTATCTCTTTACAGCCAGTTGAAATGAATGATACTGCTCCAGATCAGCAGCATCTTTGTCGGCTCGGCATTTCCAGAGGGGACAGTCCAGTGGGAAATCTTGGAGAGACTAAACAAAGTTTTGGATTTGGTGGCACAGGAAAGTTCTCGAACGCTGGAAAATTTTCTGACTATGGTGAAAAGTTTGGGATTGGTGATACTATTGTTTGTGCTGTAAATCTTGAAAGCAAGCCTCTGGCCTCTATTGGATTTTCTAAAAATGGCAAATGGCTGGGTATTGCTATACAATTTGATGCTGGTCCAAGAGGCCTGGGAGTGGTGGATTCTCCATTGAGAAAGCTTAGATGGGAATCAGCATTTTTTCCTCATGTATTGTTGAAGAATGTTGACGTCCAGTTGCAATTCAGTGTTGAAGAGGGTCTTGTTCCAGAAGAAGGCTTTAAACCATGGGCCTGTGCTTTGGTCGATGACAATGCATTGCTAGGGCCTACTTTTAATAATGTAAGAGATTGTGAAGTCATGATGATGGTGGGTCTACCGGCTTCTGGAAAAAGTACATGGGCTAAGAAATGGGCAGATGATCATCCTGAGAAACGCTATATTTTGCTTGGGACTAATCTAATTCTGGACCAAATGAAGTTACCAGGTCTATTGCGAAAACATAATTATGGTGAACGCTTTGATCGTTTGATGAATCAAGCAACTGGGATCTTCAATATACTTCTCTCTAGAGCAGCCACCGTACCTCGGAATTACATAATTGATCAAACAAATGTTTACAAGAATGCTCGTAGACGGAAACTGAAACCATTTGCGTACTTCCAGAAAATTGCTGTTGTGGTATTCCCAAAGCCTGAGGAGTTGCAGCGTCGCTCAGCTGAAAGATTTAGAGAAATGGGGAAAGAAGTACCAGCTGATGCAGTGAATGAAATGTTAGCAAATTATATCTTGCCCACTAGCAAGGACATGCCTGGATCGGAAGAATATTTTGATGAGGTTATATTTGTAGAACTTGATCGTGCAGAGTCTCAAATATACTTGGATGGGATGAAACGTGCTCTACCATCTGAATCACGTGACAACGTTACATCATTTTCTAAAGCTAGTACTGCTCCTCTTGTTTCACCTTCATCTCGAGATCAAGGTCGACATGGTATACCAGATGCTGGACGATATGGAGGACCGAGATTTATTTCTGAAGTACATCAAAAAAATATGTATTCTCCTTTACCAAGGTTTGTTCCCCCACACAGACCATACGAGAGTTTGATTGGTGAAACCAGGTACCCTGGTCCGAGTGGCCATCCGCATCACAGTTATCCTGAGAGTGATCCTTACAGCATTGGTGGACGTGGACGTTTCCTAGACAGTCGTCAGATGGGTGAACTGCCCCCAAGGGAATACACTGATGTAGCTTACCCCTTCCCACCCACTGGTCCACCTTATGGAACCGCACTTCCAAGACCAACATATCAATTTCCTTCCAATATGCCTTATGATGGTAGAGGTTATGCCTATCCACGTCCAAGCGAAGAAATGCCAACACACGCTTTCTTTACCAGAGTTTCCAGACATTTCCACGACCATCCTTCCCTTTCCAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGTCTTGTAGCATATTCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGACAATGTAGATGAGAAAAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGGAATTATTTTGCATTCACCCCACTATTGCCAAGTGTAACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATTCGCAACATTGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGTCGATCTAACGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCCGTGGGAGCACAAGTTAATACATTCAATACCCCTGGCGTTGTGGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATCGATTGCTTTGAGCGGGCAAGCCTGCCTACCCTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTATTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCACGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTTCAAGATTTTGTAAAAATTACTCTCCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAGAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTGTGGTCGACTGGTATAGGAACCCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGTAGAGTCATGGAGGATATTTCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCCGGGACACTTACAGTAAAAGAATTTCAAGAAGTCATTGATGACATTTGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAACAGATGCATAACATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTCGCAAAGGAGTCTATTGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACCGCACAGGTGGCTGCACAACAAGGTGCATATCTTGCCCATTGTTTTAACCGTATGGAAGAGAGCGAAAAATATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGACGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCGTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGAGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTATTCTGTCTATGCAAGGTGA 3660 42.92 MASIKRHRPQEDEHDAKKPKFACVSDTSELKEQHPVVLNPADCDLESILRLPSLRKYVLVRQSAKIMTFRTRRIGLEKLLVSYKTASRKILKVGFDALLLCLASLWGSSYFEIESDGLRGSALYEKGFAYCWSGARTTVGITGGKYCFGCKIISLQPVEMNDTAPDQQHLCRLGISRGDSPVGNLGETKQSFGFGGTGKFSNAGKFSDYGEKFGIGDTIVCAVNLESKPLASIGFSKNGKWLGIAIQFDAGPRGLGVVDSPLRKLRWESAFFPHVLLKNVDVQLQFSVEEGLVPEEGFKPWACALVDDNALLGPTFNNVRDCEVMMMVGLPASGKSTWAKKWADDHPEKRYILLGTNLILDQMKLPGLLRKHNYGERFDRLMNQATGIFNILLSRAATVPRNYIIDQTNVYKNARRRKLKPFAYFQKIAVVVFPKPEELQRRSAERFREMGKEVPADAVNEMLANYILPTSKDMPGSEEYFDEVIFVELDRAESQIYLDGMKRALPSESRDNVTSFSKASTAPLVSPSSRDQGRHGIPDAGRYGGPRFISEVHQKNMYSPLPRFVPPHRPYESLIGETRYPGPSGHPHHSYPESDPYSIGGRGRFLDSRQMGELPPREYTDVAYPFPPTGPPYGTALPRPTYQFPSNMPYDGRGYAYPRPSEEMPTHAFFTRVSRHFHDHPSLSRLLVLVTVSGGSLVAYSDASPTNGVPSIASKDNVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDREISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEESEKYPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYAR 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6289814 6305538 - Lsi02G007030.1 Lsi02g00703 655445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00703 1219 CDD SPRY_hnRNP 111 290 IPR035778 -
Lsi02g00703 1219 Pfam SPRY domain 168 247 IPR003877 GO:0005515
Lsi02g00703 1219 SUPERFAMILY Concanavalin A-like lectins/glucanases 108 247 IPR013320 -
Lsi02g00703 1219 PRINTS FAD-dependent pyridine nucleotide reductase signature 889 907 - -
Lsi02g00703 1219 PRINTS FAD-dependent pyridine nucleotide reductase signature 828 846 - -
Lsi02g00703 1219 PRINTS FAD-dependent pyridine nucleotide reductase signature 725 744 - -
Lsi02g00703 1219 SUPERFAMILY FAD/NAD(P)-binding domain 880 1042 IPR036188 -
Lsi02g00703 1219 MobiDBLite consensus disorder prediction 508 528 - -
Lsi02g00703 1219 Gene3D - 104 311 IPR043136 -
Lsi02g00703 1219 ProSiteProfiles EF-hand calcium-binding domain profile. 1045 1080 IPR002048 GO:0005509
Lsi02g00703 1219 PANTHER NADH DEHYDROGENASE 667 1218 IPR045024 GO:0003954|GO:0006116
Lsi02g00703 1219 Pfam AAA domain 324 466 - -
Lsi02g00703 1219 SMART SPRY_3 143 290 IPR003877 GO:0005515
Lsi02g00703 1219 ProSitePatterns EF-hand calcium-binding domain. 1058 1070 IPR018247 -
Lsi02g00703 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 471 IPR027417 -
Lsi02g00703 1219 SMART efh_1 1049 1077 IPR002048 GO:0005509
Lsi02g00703 1219 Gene3D - 318 499 IPR027417 -
Lsi02g00703 1219 SUPERFAMILY EF-hand 1038 1133 IPR011992 -
Lsi02g00703 1219 Gene3D - 712 1074 - -
Lsi02g00703 1219 Gene3D - 1090 1219 - -
Lsi02g00703 1219 PANTHER NAD(P)H DEHYDROGENASE B2 667 1218 - -
Lsi02g00703 1219 MobiDBLite consensus disorder prediction 508 544 - -
Lsi02g00703 1219 SUPERFAMILY FAD/NAD(P)-binding domain 722 941 IPR036188 -
Lsi02g00703 1219 Pfam Pyridine nucleotide-disulphide oxidoreductase 723 1048 IPR023753 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00703 Lsi-Chr2:6289814 Lsi10g00864 Lsi-Chr10:12804487 0 dispersed
Lsi01g00349 Lsi-Chr1:3101829 Lsi02g00703 Lsi-Chr2:6289814 5.66E-57 wgd
Lsi11g01519 Lsi-Chr11:23603900 Lsi02g00703 Lsi-Chr2:6289814 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00703 K03885 - csv:101204145 1073.15