Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00706 ATGAACGACTTATTCTCGAATTCGTTCAAAAAGTACACGGATCTGAAGCAACAGGCGTATCTGGACAGCATGGAGGCTGGAAATGAGAGTGTAAATTTGGACAGATTCTTTGAAGATGTAGAAAATGTTAAAGATGACATGAAACAGGTGGAGAGTTTGTACAAAAAACTGCAGCAGGATAATGAGGAGTGCAAGATTGTTCATAATGCCAAGACAATGAAGGAGCTGAGGGGCAGAATGGAGGCTGATGTTGCTCAAGTTCTAAAGCGAGTCAAAATGATCAAAGGAAAGCTCGAAGCTCTCGACCGTTCCAATGCTGCTCACCGCAGTCTCCCCGGCTGCGGCCCTGGCTCCTCCGCTGACCGAACTCGAACCTCCGTCGTCAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGATCTCGAATGAATGCTGAGTACAAAGAAACCGTCGAGCGAAGGTATTTCACAGTGACAGGGCAGAAAGCAAATGAAGAGACAATAGAGAATTTGATATCAAGTGGGGAAAGTGAGAGTTTCCTGCAGAAGGCGATTCAAGAACAGGGGAGGGGACAGATAATGGACACAATTTCAGAGATTCAGGAACGACATGACGCTGTGAAGGAAATAGAGAAGAATTTATTAGAGCTGCATCAGATTTTCTTGGACATGGCGGCTCTGGTTGAAGCTCAAGGCCATCAACTGAACGACATTGAAAGCCATGTCGCACATGCTAACTCCTTTGTTAGAAGAGGAACAGAGCAACTGCAAGAAGCCAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATAATTTTGGGGGCTGTTCTCATTGTTATTCTTCTCTTCCCAATTTTAACTTCAATTTTACCTCATTTGTTGTAG 912 44.41 MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVESLYKKLQQDNEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALDRSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRSRMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAIILGAVLIVILLFPILTSILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6322594 6324427 + Lsi02G007060.1 Lsi02g00706 655448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00706 303 Gene3D - 193 298 - -
Lsi02g00706 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi02g00706 303 PANTHER SYNTAXIN-124-RELATED 6 295 - -
Lsi02g00706 303 CDD SNARE_syntaxin1-like 202 264 - -
Lsi02g00706 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Lsi02g00706 303 CDD SynN 33 190 IPR006011 GO:0016020
Lsi02g00706 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Lsi02g00706 303 Pfam SNARE domain 240 291 IPR000727 -
Lsi02g00706 303 SMART tSNARE_6 198 265 IPR000727 -
Lsi02g00706 303 Coils Coil 33 67 - -
Lsi02g00706 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lsi02g00706 303 Gene3D - 33 160 - -
Lsi02g00706 303 PANTHER SYNTAXIN 6 295 IPR045242 -
Lsi02g00706 303 SMART SynN_4 28 154 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01659 Lsi-Chr1:15160644 Lsi02g00706 Lsi-Chr2:6322594 1.05E-98 dispersed
Lsi02g00706 Lsi-Chr2:6322594 Lsi03g01810 Lsi-Chr3:29539565 2.03E-108 dispersed
Lsi02g00706 Lsi-Chr2:6322594 Lsi01g01181 Lsi-Chr1:10035743 5.17E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00706 K08486 - csv:101217140 573.163