Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00739 ATGGATACCGCCTTTCGAATAATAGCCGCTTCCAAGTGTAGCTACCGTCCATCGCCGCCGAAGTTTTACGGAATTACGGCCCCAAGTATGAGTTGCATCTGCTTTGGTTCCTCTACTGTGGAGAAGAAACGAATATCTACACGTGCTGATAAGGAATTGGATATTGACTTGCTTGAGAATGTAAAACAAATCTCCTTCAATGAATTAAGATCTGCTTCGGACGATTTCCATTCAAACAATAGAATTGGACGGGGAGGTTTTGGAACTGTTTACAAGGGCTCATTAAGGAATGGAGTACAGGTTGCGATAAAGAAACTCTCTATAGAGTCTAAGCAAGGTGCTCGGGAATTTTTGACAGAGATCAAAACCATTTCAAATGTTAGGCATCCAAACCTTGTTGAGTTGATTGGATGCTGTTGTCAAAAAGCTAACCGGATCTTGGTATATGAATATCTGGAGAATAATAGTCTCGACCATGCTTTGTTAGATCCTAAGAAAACAAGCGTCAACCTGGATTGGGAGAAAAGGTCCTCTATTTGCATTGGTATTGCTAGGGGTCTTCAATTTCTTCACGAGGAAGCTGTTCCACGTATTGTGCACAGAGACATCAAGGCTAGTAATATACTCCTTGATAGGGACTTCAATCCAAAAATCGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATTACTCACATTAGCACAAGAATTGCAGGAACAACGACACATAATGGTATGTTCCATGGCCTGAGGATCAAGATCTTAGGAGCGTCGGTAGTGTCCATGAGTACTAAGAGGCAAGGCTGTCTTTTGCCTTGTAGAATCTATCTTAGTAGCTTGGAACTCTGTTTTTGTGCTCATCAATTCCAAGGAAGCTACTCATTGTTGTTCTTGCTTAGTGTGACCGTAACACTAACAGCCAATGGTTATTTGGCTCCAGAGTATGCATTGGGAGGTCAGCTAACTCCGAAGGCTGATGTATATAGCTTTGGAGTCCTCATCCTTGAAATAGTTAGTGGTAGACGTAGCAGTACAGTTTTTGGGAGAGAAATATCAATACTCTTCCTGGAAAGGGTGTGGGAGTTATATGAAGAAGGAAAACTCTTAGATATAGTGGATCCTAGACTAGGAGACTATCCTCACGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTTTGCACACAAGCGGCTGCAAATCGACGGCCAGTGATGAGCCAAGTCATTGACATGCTTACAAAGAAGATCAAGCTTAACGAGAAGCTACTTACCTCCCCAGGGTTCTACGGAGGCTTGGGGCTTAGCGACATTCCTTCAACGAGCAAGAAGACTTCGAACACTTCCACTAGCAACGAGATGAGCTCTGCAGTCATCTCCATAACTCAAATCACCCCCAGATGA 1404 42.95 MDTAFRIIAASKCSYRPSPPKFYGITAPSMSCICFGSSTVEKKRISTRADKELDIDLLENVKQISFNELRSASDDFHSNNRIGRGGFGTVYKGSLRNGVQVAIKKLSIESKQGAREFLTEIKTISNVRHPNLVELIGCCCQKANRILVYEYLENNSLDHALLDPKKTSVNLDWEKRSSICIGIARGLQFLHEEAVPRIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTTHNGMFHGLRIKILGASVVSMSTKRQGCLLPCRIYLSSLELCFCAHQFQGSYSLLFLLSVTVTLTANGYLAPEYALGGQLTPKADVYSFGVLILEIVSGRRSSTVFGREISILFLERVWELYEEGKLLDIVDPRLGDYPHEEVLRYMKVALFCTQAAANRRPVMSQVIDMLTKKIKLNEKLLTSPGFYGGLGLSDIPSTSKKTSNTSTSNEMSSAVISITQITPR 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6760443 6769456 - Lsi02G007390.1 Lsi02g00739 655481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00739 467 Gene3D Transferase(Phosphotransferase) domain 1 152 425 - -
Lsi02g00739 467 SMART serkin_6 76 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00739 467 Pfam Protein kinase domain 76 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00739 467 PANTHER - 309 458 - -
Lsi02g00739 467 ProSiteProfiles Protein kinase domain profile. 76 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00739 467 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 242 - -
Lsi02g00739 467 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 309 458 - -
Lsi02g00739 467 SUPERFAMILY Protein kinase-like (PK-like) 58 413 IPR011009 -
Lsi02g00739 467 PANTHER - 21 242 - -
Lsi02g00739 467 CDD STKc_IRAK 82 415 - -
Lsi02g00739 467 Pfam Protein tyrosine and serine/threonine kinase 311 412 IPR001245 GO:0004672|GO:0006468
Lsi02g00739 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lsi02g00739 467 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Lsi02g00739 467 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00739 Lsi-Chr2:6760443 Lsi03g02204 Lsi-Chr3:33067216 2.67E-116 dispersed
Lsi02g00739 Lsi-Chr2:6760443 Lsi01g00384 Lsi-Chr1:3350839 1.12E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83379 PF00069 Pkinase 3.60E-35 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00739 - - csv:101207026 405.986