Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00755 ATGGAAGTTGAAGACGATTATCGAAGAAAACAGCAACTCGTTCTTCTTGCTATCGTTGTTCTTGCTTCACTTGCTCTCGTTTCTTTGCTCGTTGCTTTTAGCTATTACTGCTATATCAGCAATAAGGTTTCTAAGCGCCTCAAGATCCGCAAAAGGGCTGATCTTGAAGATGGTGGTAGTTTTGAAAATGTTAAAGAATTTTCCACTGAGAAAGGTCTCCAATTGTTCACTTTCAAGCAGCTACACTCCGCAACCGGTGGGTTTAGCAAGTCAAATGTGGTTGGGCATGGTAGCTTTGGCCATGTATATCGAGGAGTCCTAAACGATGGGAGAAAGGTTGCAATTAAGCTTATGGATCAAGCGGGGAAGCAGGGAGAGGATGAATTTAAAGTGGAGGTGGAATTGTTAAGTCGGCTTCATTCACCATATTTGTTGGCATTGCTTGGATATTGCTCAGATAACAATCATAAATTGCTCGTATACGAGTTCATGGCAAATGGCGGTCTGCAAGAACATCTATACCCTGTTAGGAGTTCAAATTCCATCAGTGTTAAGTTGGACTGGGAAACACGGCTGAGAGTTGCTCTTGAAGCTGCCAAAGGTTTGGAGTATTTACATGAACACGTATGTCCCCCAGTAATTCATAGGGATTTCAAGAGCAGCAATGTCCTGCTGGACAAAAATCTTCACGCTAAGGTTTCTGATTTTGGATTGGCAAAGATCGGCTCAGACAAAGCCGGGGGTCATGTCTCCACTCGAGTTTTGGGGACACAAGGATATGTTGCTCCTGAGTATGCACTAACAGGGCATTTAACAACAAAGTCAGATGTCTATAGTTATGGGGTTGTCCTCTTGGAGCTGCTCACTGGCAGAGTTCCAGTTGATATGAAGAGAACTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTTTGCCGAGGCTGACTGACAGGGAGAGAGTGATGCATATAATGGACCCTGCATTGGAGGGTCAGTACTCCATGAAGGATGTTGTTCAAGTGGCAGCAATCGCAGCAATGTGTGTTCAACCGGAGGCGGATTATAGGCCGCTGATGGCCGATGTTGTCCAGTCACTGGTTCCATTGGTGAGAAATTACCGGACAACTTCAAAGCTCGGTAGCAGTTCTAGTTCCAGCGCTACCAAGTCGCCTACACCGCACGACAATGCTAGTTCGGGAGACTGA 1200 45.75 MEVEDDYRRKQQLVLLAIVVLASLALVSLLVAFSYYCYISNKVSKRLKIRKRADLEDGGSFENVKEFSTEKGLQLFTFKQLHSATGGFSKSNVVGHGSFGHVYRGVLNDGRKVAIKLMDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPVRSSNSISVKLDWETRLRVALEAAKGLEYLHEHVCPPVIHRDFKSSNVLLDKNLHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRTPGEASLVSWALPRLTDRERVMHIMDPALEGQYSMKDVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVRNYRTTSKLGSSSSSSATKSPTPHDNASSGD 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6928933 6933279 - Lsi02G007550.1 Lsi02g00755 655497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00755 399 SUPERFAMILY Protein kinase-like (PK-like) 63 364 IPR011009 -
Lsi02g00755 399 PANTHER OS07G0227300 PROTEIN 3 395 - -
Lsi02g00755 399 Gene3D Transferase(Phosphotransferase) domain 1 164 386 - -
Lsi02g00755 399 CDD STKc_IRAK 94 367 - -
Lsi02g00755 399 PANTHER OS01G0750732 PROTEIN 3 395 - -
Lsi02g00755 399 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Lsi02g00755 399 MobiDBLite consensus disorder prediction 374 399 - -
Lsi02g00755 399 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00755 399 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Lsi02g00755 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Lsi02g00755 399 Gene3D Phosphorylase Kinase; domain 1 52 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00755 Lsi-Chr2:6928933 Lsi06g00150 Lsi-Chr6:1564114 1.43E-142 dispersed
Lsi02g00755 Lsi-Chr2:6928933 Lsi06g00279 Lsi-Chr6:3176091 6.33E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83380 PF07714 PK_Tyr_Ser-Thr 7.20E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00755 - - csv:101204636 749.969