Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00756 ATGGCCGTACTCAAACTCCAAATTCTCCTCCTCTCTTTCCCCCTTCTTCTTTTCTCCTCCATTTTCGCCATCGATTTCCTCTTCAATGGCTTCAATTCCACCGACGTCTCCCTCTACGGCAACGCCACCATCGAATCCCCTTTCATCGCTCTCACCAACCAAACCAATTTCTCCATCGGCCGCGCTCTCTACCCTTCCAAAATCCCCACTAAATCTCCAAATTCCTCCTTCCCCTACCCTTTCTCCACTTCTTTCATCTTCGCCATGGCTCCTTACAGGGATACCCTTCCTGGGCATGGCTTGGTTTTCATTTTCGTTCCGACCACCGGAATCGGCGGAACTGCCTCTGCTCAGAATCTGGGGTTTCTTAACTTCACGCTTAATGGGAACCCCAATAACCATGTCTTTGGAATTGAGTTCGATGTGTTTGCTAATGAGGAATTCAACGATCCCGACGATAATCATGTTGGAATCAACTTGAATTCCTTGACGTCTTTCGTCACCGGGGAAGCTGGGTTTTGGTCCGACGGTGGTGGGACGGATTCTTTCAACAGGTTCAGGCTTAATAGCGGCGAAAATTATCAAGTCTGGATTGACTATTCCGATTTTCAGATGAATGTTACGATGGCTCCGGCGGGGATGAAGAAGCCACGGCGGCCGTTGATTAATACGTCTCTGAATCTCTCTGGAATTTTCATGGATGAAATGTATGTGGGGTTCACAAGTTCTACAGGGCAGTTGGTTCAAGGCCATAACATTTTAGCTTGGAGTTTCAGCAACTCTAATTTTTCATTGAGTGAGAGTTTGATTACCACTGGATTGCCCTCCTTCGTCCTCCCGAAAGACCCAATTACCAAATCGAAGTGGTTCATCGCCGGAGTGACGGCCGGCGGATTCCTCGTCGTTTGTTTCATCGGAACGATTTTGGGGATTTTGATCGCCGACCACCGGAGGAAAGCGAGATTGAGAGCCGAAATGGAAGATTGGGAATTGGAGTATTGGCCACACCGAATGACATATCAAGAAATCGAATCGGCAACGAAAGGATTTGCAGAGGAAAATGTGATCGGAATCGGAGGGAATGGGAAAGTTCATAAAGGGATTTTGGCCGGAGGAGGTTCTGAAGTCGCAGTGAAACGAATTTCTCACGATAACGACGGGATGCGTGAGTTCTTAGCTGAAATCTCAAGCATAGGGAGATTAAAGCACAGAAATCTAGTAAGTTTGAAGGGTTGGTGTAAAAAAGAGAAGGGAAATTTCTTAGTGGTTTACGATTACATGGAAAATGGAAGTTTAGACAAATGGGTATTTGATTGCGAGGAGAGAAACATGTTGAGTTGCGAGGATCGAATCAGAGTATTGAAGAACGTAGCCTCAGGGGTTTTGTATTTACACGAAGGATGGGAATCAAAGGTTCTTCACAGGGATATAAAAGCTAGCAACGTGTTGTTAGATAAGGACATGAATGGAAGGTTAGGAGATTTCGGGCTAGCTCGAGTCCATGGTCACGGTCAAGTGGCGAGCACGACTCGAGTCGTTGGCACCATGGGCTATATTGCGCCCGAGTTGATTCGAACCGGACGAGCCTCAGCTCAATCAGACGTGTTTGGTTTTGGAGTTTTGATTTTGGAAGTGATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCCCCGTTGGTGGATTGGGTTCGGCGGTTGGTTGTTGAAGGGGAGCTCATGGCAGCACTCGATGAGAGGATGAGGAAGAAGGGCGGGTGGAGCGAGGAGGAAGTTGAGAGAGTACTGCATTTGGGGTTGGTGTGCGTGCATCCTGACCCGAACACTCGGCCTACGATGAGGCAAATTGTGAAAGTTTTGGAAGGGAAGATTGAGTTGGATGAGAGTGAGAGTGAGAGTATGAATGCTTATTTGCTTCAAAGATTGAAGTCACAAGGAATTTGGTCTGATTCTTCAGTTGGTTTTGGGGATAAATTGCATCCTACATTTGAGGATTTTCTTCAGTCTTCTTCAACTTCCATATCTTGGTCTACTTCCACTGTCACTGGCAGGTGA 2052 47.08 MAVLKLQILLLSFPLLLFSSIFAIDFLFNGFNSTDVSLYGNATIESPFIALTNQTNFSIGRALYPSKIPTKSPNSSFPYPFSTSFIFAMAPYRDTLPGHGLVFIFVPTTGIGGTASAQNLGFLNFTLNGNPNNHVFGIEFDVFANEEFNDPDDNHVGINLNSLTSFVTGEAGFWSDGGGTDSFNRFRLNSGENYQVWIDYSDFQMNVTMAPAGMKKPRRPLINTSLNLSGIFMDEMYVGFTSSTGQLVQGHNILAWSFSNSNFSLSESLITTGLPSFVLPKDPITKSKWFIAGVTAGGFLVVCFIGTILGILIADHRRKARLRAEMEDWELEYWPHRMTYQEIESATKGFAEENVIGIGGNGKVHKGILAGGGSEVAVKRISHDNDGMREFLAEISSIGRLKHRNLVSLKGWCKKEKGNFLVVYDYMENGSLDKWVFDCEERNMLSCEDRIRVLKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVASTTRVVGTMGYIAPELIRTGRASAQSDVFGFGVLILEVMCGRRPIEEGKPPLVDWVRRLVVEGELMAALDERMRKKGGWSEEEVERVLHLGLVCVHPDPNTRPTMRQIVKVLEGKIELDESESESMNAYLLQRLKSQGIWSDSSVGFGDKLHPTFEDFLQSSSTSISWSTSTVTGR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6947359 6949410 + Lsi02G007560.1 Lsi02g00756 655498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00756 683 Gene3D Phosphorylase Kinase; domain 1 313 426 - -
Lsi02g00756 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Lsi02g00756 683 ProSiteProfiles Protein kinase domain profile. 350 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00756 683 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524
Lsi02g00756 683 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Lsi02g00756 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 7 676 - -
Lsi02g00756 683 Pfam Legume lectin domain 24 263 IPR001220 GO:0030246
Lsi02g00756 683 CDD lectin_legume_LecRK_Arcelin_ConA 24 256 IPR001220 GO:0030246
Lsi02g00756 683 PANTHER - 7 676 - -
Lsi02g00756 683 Gene3D - 23 268 - -
Lsi02g00756 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 266 IPR013320 -
Lsi02g00756 683 SUPERFAMILY Protein kinase-like (PK-like) 328 620 IPR011009 -
Lsi02g00756 683 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00756 683 CDD STKc_IRAK 356 621 - -
Lsi02g00756 683 SMART serkin_6 350 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00756 Lsi-Chr2:6947359 Lsi11g01564 Lsi-Chr11:23925398 0 dispersed
Lsi02g00756 Lsi-Chr2:6947359 Lsi03g02126 Lsi-Chr3:32450062 2.14E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83381 PF00069 Pkinase 1.20E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00756 - - csv:101222577 1208.36