Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00759 ATGGCAGAGGATGCTAATTCTTGGTTAAGAAGAACCAAGTTTTCTCACACAATATGTTATCGTTTAGAGTCCTTACGATTGGCTTCCTTTCCTGTGGCCACTAAGCCATCATTCAAATCAGTTGCACAATCAAGATCAACCCTTCCTCATAACCTATCCAAGCAGAGGTCTTTATCTCCTCCTCCACAAACTACACTCTCCAGCACATTTAAGAATGCACGTATCGATCAGAAGCGATTTTCAACTCCACAGCCTCAGAGGAAAGAGCCTATAAAAGAGAAGGGTAAAAGGCTATTTAGTAAAAAAGCTAAGGTGCAGAATTCCCTAAAGGAAGAGAAGTTAAAAGGGCCTTTGAGGCATCGTATCTCTTTTAAAGGCAATGAGAAATTCAAATTCAAGGAGTCTTCTTGGCCCAAGTTTTTCGAGCACAGTGGAGGGAAGGTCACTGCTGTTGAAGCTGAAGATGATTCGTCTATTGACCTGTCTAAGTTGATGTTTGGACATAGATTTGCTTTTGGAGCTCATAGTCGGCTTTACCATGGAATTTATGAAGATAAAGTTGTTGCTGCTAAAATGATCAATTTACCAGCCAATGACGAAAATGGCGATCTCGCAGGTCGCTTAATAAAGCAATTTGGTAGGGAAGTAACCCTTTTATCTCGTCTTCACCATCCCAATGTTATAAAGTTAGTAGCAGCTGTGAAAAAGCCACCCGTTTATTGCATCATCACTGAGTATCTACCTCGGGGTTCCTTGAGGGCATATCTTCACAAACTTGAAAAAAAATCTCTCCCACTGCAAAAACAAATTGCCATTGCCTTAGACATTGCTCGTGGGATGGAATACATACACTCGCAAGGCGTCATTCATCGGGATCTCAAACCCGAGAACATTCTTATTGATCAAGACTTTTGTCTAAAGATTGCCGATTTCGGCATTGCTTGTGAGGAGGCGCATTGTGATACATTGGCCGAAGACCCGGGAACTTTTCGTTGGATGGCCCCGGAGATGATCAAACGTAAACCTTACGGAAGAAAGGTCGATATCTACAGCTTTGGACTTCTCCTATGGGAATTGGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCAATCCAAGCAGCTTTTGCAGTTGTAGACAAGAATATTAGACCGGTTATCCCGAGCGAGTGTCCTCCAGTGATGCGGGCGTTGATCGAGCAATGTTGGTGCGAGAAACCGGAAAAGCGGCTGGAGTTTTGGCAGGTGGTGAAAGTGTTAGAGAAAGTTGAGAGTTGTGTTGGGGGAGATGGTACATTGATGATGAGTGTAGAGCTACTAGAGGTAAAGGAGAAGCCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATACAGAAGCTTGGTCCTCTTCATTCTCATACTCTTCTCACATCCAGATCTAAATTCATATGA 1437 42.87 MAEDANSWLRRTKFSHTICYRLESLRLASFPVATKPSFKSVAQSRSTLPHNLSKQRSLSPPPQTTLSSTFKNARIDQKRFSTPQPQRKEPIKEKGKRLFSKKAKVQNSLKEEKLKGPLRHRISFKGNEKFKFKESSWPKFFEHSGGKVTAVEAEDDSSIDLSKLMFGHRFAFGAHSRLYHGIYEDKVVAAKMINLPANDENGDLAGRLIKQFGREVTLLSRLHHPNVIKLVAAVKKPPVYCIITEYLPRGSLRAYLHKLEKKSLPLQKQIAIALDIARGMEYIHSQGVIHRDLKPENILIDQDFCLKIADFGIACEEAHCDTLAEDPGTFRWMAPEMIKRKPYGRKVDIYSFGLLLWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPSECPPVMRALIEQCWCEKPEKRLEFWQVVKVLEKVESCVGGDGTLMMSVELLEVKEKPSWEDHKKGLKHWIQKLGPLHSHTLLTSRSKFI 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6999270 7002125 - Lsi02G007590.1 Lsi02g00759 655501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00759 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Lsi02g00759 478 Gene3D Transferase(Phosphotransferase) domain 1 248 457 - -
Lsi02g00759 478 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 447 - -
Lsi02g00759 478 ProSiteProfiles Protein kinase domain profile. 164 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00759 478 SUPERFAMILY Protein kinase-like (PK-like) 156 420 IPR011009 -
Lsi02g00759 478 SMART serkin_6 164 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00759 478 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 447 - -
Lsi02g00759 478 Gene3D Phosphorylase Kinase; domain 1 153 247 - -
Lsi02g00759 478 Pfam Protein tyrosine and serine/threonine kinase 168 420 IPR001245 GO:0004672|GO:0006468
Lsi02g00759 478 PRINTS Tyrosine kinase catalytic domain signature 391 413 IPR001245 GO:0004672|GO:0006468
Lsi02g00759 478 PRINTS Tyrosine kinase catalytic domain signature 282 300 IPR001245 GO:0004672|GO:0006468
Lsi02g00759 478 PRINTS Tyrosine kinase catalytic domain signature 328 338 IPR001245 GO:0004672|GO:0006468
Lsi02g00759 478 PRINTS Tyrosine kinase catalytic domain signature 244 257 IPR001245 GO:0004672|GO:0006468
Lsi02g00759 478 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672|GO:0006468
Lsi02g00759 478 CDD STKc_MAP3K-like 171 420 - -
Lsi02g00759 478 MobiDBLite consensus disorder prediction 39 97 - -
Lsi02g00759 478 MobiDBLite consensus disorder prediction 81 96 - -
Lsi02g00759 478 MobiDBLite consensus disorder prediction 39 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00366 Lsi-Chr2:3140797 Lsi02g00759 Lsi-Chr2:6999270 1.02E-105 dispersed
Lsi02g00759 Lsi-Chr2:6999270 Lsi07g01075 Lsi-Chr7:16102866 2.15E-73 dispersed
Lsi01g00311 Lsi-Chr1:2761648 Lsi02g00759 Lsi-Chr2:6999270 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83382 PF07714 PK_Tyr_Ser-Thr 1.30E-58 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00759 - - csv:101222817 852.432