Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00781 ATGCTTCTCCACCCACTCTTCCTCCTCTTCTTCTTCTTCTTCACCTTCCTCTCAAACCCTTCTCTTCTCTCCCACTCTCTAACCCAAGAAGGCCTCTATCTCCACTCCATCAAGCTCTCTCTTGACGACCCAGATTCCTCTCTTCGCTCATGGAACGACCGCGATGACACTCCCTGTTCCTGGTTCGGCGTCTCTTGTGACCCTCAAACCAACTCCGTCCACTCTCTCGACCTCTCTAACACCAATATCGCCGGCCCATTTCCTTCCATCCTTTGCCGTCTCCAGAATCTCTCGTTCCTTTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGACTGCACCAGTCTCCACCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTTCCGAGCTCGATTGCCGATCTCCCCAACCTTCGTAACTTGGATTTGACAGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCCCTGTTTCGGAACTTGGAAGTTCTGTCGCTTGTTTATAATCTTCTCGATGGGCCTATGCCGGCGTTTCTCGGCAACATTACGTCGTTGAAGATGTTGAACCTATCTTATAACCCGTTTATGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTCGAGGTTCTCTGGTTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTCTTGGTCGGTTGAAGCGGCTTACCGATTTGGACTTGGCGTTGAATAATCTTGATGGTCCGATTCCGAAGTCGCTCACGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACAGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGCGATTCCGGAGGAGTTGTGTCAGTTGCCGCTCGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGGAACTTACCGGAAAGCATTGCTAACTCGCCGAGTTTATACGAACTCAGACTGTTCAGTAACCGGCTGACTGGCGAGTTACCGCCAAATCTTGGAAAGAACTCGCCGTTGAGATGGATGGATGTTTCCAACAACCAATTTTCGGGTGAAATCCCGGGGAATTTGTGTGAGAAGGGAGAGTTGGAGGAGCTTCTAATGATCAACAACCAATTTTCCGGCGAGATTCCGGCGAGTTTAGGTTCGTGCGAGAGTCTTACGAGGGTACGATTAGGTTATAATCGATTTTCCGGCGAGGTACCGGCGGGATTTTGGGGGCTCCCAAATGTGTATCTGTTGGAGCTGGTGAGTAACTCGTTTTCTGGGAGGATTTCGGATGACATTGCCACTGCTAAGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGCACGCTACCGGCGGAGATGGGACGGCTGGAAAATCTTGTGAAGTTGCTAGCGACGGATAACAAACTCACTGGGTCATTACCAGGGAGTCTTGTGAATCTTAGACACCTTTCGAGTTTAGATCTTCGGAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAATCGTGGAAGAATCTCAACGAACTCAATTTAGCAAACAACGAATTCACCGGCGAAATCCCTGAAGAAATCGGAAGCTTGCCTGTTCTAAATTACCTTGATCTGTCTGGAAATCTGTTTTCTGGGGATATCCCTCTTGGGTTACAGAATTTGAAGCTCAATCTACTCAATTTATCAAACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCTAAAGAAATCTACAGAAATAGCTTTATGGGGAATCCAGATTTGTGTGGGCATCTTGAAAGTTTATGCAACAGCAAAGGTGAAGCTAAAAGCCAAGCCTCTCTCTGGTTGCTGCGATCCATCTTCGTCCTTGCCGGTTTCGTGTTTATCGTCGGTGTCATCTGGTTTTACCTCAAGTACAGGAAGTTTAAGATGGCAAAGAAAGAAATGGAGAAGAGCAAATGGACATTGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGATTGTCTTGATGAAGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAACTGTTTGGAGGGATGAGGAAAGAGTGCGAAAAAGGCGATATCGAGAAGGGACAAGTTCAAGACAATGCCTTCGAAGCCGAAATCGATACTTTGGGAAAGATTAGGCACAAAAACATTGTGAAGTTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTAGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGCAAAAAAGGACTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCATCACGATTGCGTCCCTCCAATCGTTCATCGAGACGTTAAGTCAAACAATATCTTGTTGGATGGCAATTTCGGAGCACGGTTGGCTGATTTCGGTGTAGCTAAAGTCATTGATTCAACTGGAAAAGGGCCTAAATCCATGTCGGTTATCGCAGGATCTTGCGGTTACATCGCGCCTGAGTATGCTTATACACTCCGAGTGAACGAAAAAAGCGATATATACAGTTTCGGCGTGGTGATCCTCGAGCTAATAACCGGGAGGCTCCCAGTCGATCCGGAGTTCGGGGAGAAGGACTTGGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATCGATCAAGTGATCGACCAGAAACTGGATAGCTGTTTCAAGGAAGAAATATGCAGAGTCCTTAACATTGGGTTGCTCTGCACCAGCCCTCTTCCCATAAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGAGCAGAGAACCAACTGAAAAGCAACAGTAAAGATGGAAAGTTAACTCCTTATTATTACGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 3006 46.21 MLLHPLFLLFFFFFTFLSNPSLLSHSLTQEGLYLHSIKLSLDDPDSSLRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSILCRLQNLSFLSLYNNSINMSLPSVISDCTSLHHLDLSQNLLTGALPSSIADLPNLRNLDLTGNNFSGDIPESFALFRNLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFMPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSLGRLKRLTDLDLALNNLDGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPEELCQLPLESLNLYENKFEGNLPESIANSPSLYELRLFSNRLTGELPPNLGKNSPLRWMDVSNNQFSGEIPGNLCEKGELEELLMINNQFSGEIPASLGSCESLTRVRLGYNRFSGEVPAGFWGLPNVYLLELVSNSFSGRISDDIATAKNLSIFIISKNNFTGTLPAEMGRLENLVKLLATDNKLTGSLPGSLVNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGSLPVLNYLDLSGNLFSGDIPLGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFMGNPDLCGHLESLCNSKGEAKSQASLWLLRSIFVLAGFVFIVGVIWFYLKYRKFKMAKKEMEKSKWTLMSFHKLDFSEYEILDCLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKECEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGNFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCFTLDQDGIDQVIDQKLDSCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNSKDGKLTPYYYEDASDQGSVA 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7205457 7209045 + Lsi02G007810.1 Lsi02g00781 655523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00781 1001 SUPERFAMILY Protein kinase-like (PK-like) 679 968 IPR011009 -
Lsi02g00781 1001 Gene3D Ribonuclease Inhibitor 186 265 IPR032675 -
Lsi02g00781 1001 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 981 - -
Lsi02g00781 1001 Pfam Protein kinase domain 690 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00781 1001 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Lsi02g00781 1001 Gene3D Ribonuclease Inhibitor 334 621 IPR032675 -
Lsi02g00781 1001 MobiDBLite consensus disorder prediction 979 1001 - -
Lsi02g00781 1001 SUPERFAMILY L domain-like 28 263 - -
Lsi02g00781 1001 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Lsi02g00781 1001 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Lsi02g00781 1001 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 13 981 - -
Lsi02g00781 1001 ProSiteProfiles Protein kinase domain profile. 688 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00781 1001 Pfam Leucine rich repeat 143 202 IPR001611 GO:0005515
Lsi02g00781 1001 SMART LRR_typ_2 94 118 IPR003591 -
Lsi02g00781 1001 SMART LRR_typ_2 142 165 IPR003591 -
Lsi02g00781 1001 SMART LRR_typ_2 215 239 IPR003591 -
Lsi02g00781 1001 SMART LRR_typ_2 287 311 IPR003591 -
Lsi02g00781 1001 SMART LRR_typ_2 502 525 IPR003591 -
Lsi02g00781 1001 SMART LRR_typ_2 190 214 IPR003591 -
Lsi02g00781 1001 SMART LRR_typ_2 550 573 IPR003591 -
Lsi02g00781 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Lsi02g00781 1001 Gene3D Transferase(Phosphotransferase) domain 1 776 994 - -
Lsi02g00781 1001 Gene3D Phosphorylase Kinase; domain 1 652 775 - -
Lsi02g00781 1001 SUPERFAMILY RNI-like 207 585 - -
Lsi02g00781 1001 Gene3D Ribonuclease Inhibitor 266 333 IPR032675 -
Lsi02g00781 1001 SMART serkin_6 688 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00781 Lsi-Chr2:7205457 Lsi08g01069 Lsi-Chr8:19264364 0 dispersed
Lsi03g00787 Lsi-Chr3:11457023 Lsi02g00781 Lsi-Chr2:7205457 2.17E-11 transposed
Lsi05g00804 Lsi-Chr5:11931475 Lsi02g00781 Lsi-Chr2:7205457 0 transposed
Lsi09g01758 Lsi-Chr9:26311232 Lsi02g00781 Lsi-Chr2:7205457 4.31E-10 transposed
Lsi11g01398 Lsi-Chr11:22525235 Lsi02g00781 Lsi-Chr2:7205457 0 transposed
Lsi01g00288 Lsi-Chr1:2547424 Lsi02g00781 Lsi-Chr2:7205457 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83383 PF00069 Pkinase 2.00E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00781 - - csv:101213542 1821.21