Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00787 ATGCCTGTCCCTTTTTCTCTCCTCTGTTTTCTCACTCTGCTCCTCATTTTTCACACACCATTAAAATGTGCAGCAGCACCACCACCACCACCATCACCTAAACAAGCCCTCGCCCGCCGCCACCGCCTCCTCTCTGTCGATTATTACAACAAAACATGCCCTCATCTCGACCAACTCGTCTCCTCAATCACTACCCAACAGTTCAGAGATGCACCAGTCTCTGCTCCAGCAACACTCCGCCTCTTCTTCCATGATTGCTTTGTAGAAGGCTGTGATGGGTCGATTCTGATATCAACAAAGCCAGGCAGCAAAGTGGCGGCGGAAAAGGATGCGGCGGACAACAAGGGGCTGAGACCGGAAGGATTTGAAAGCATCAAGAAAGCCAAGGCGTTGGTTGAAAGCAAGTGCCCCGGCGTTGTGTCTTGTGCTGACATCCTCGCAATTGCAGCCAGAGATTTTGTCCATTTGGCAGGAGGGCCGTATTACCAGGTGAAGAAGGGACGATGGGACGGGAAGATATCAATGGCGTCCAGAGTAGGTTTCAATCTGCCGCGAGCAAATTCCACCGTCGACCAGCTTCTCAAACTCTTCAACTCCAAAGGTCTATCTGCCGATGACCTCGTTGTCCTCTCCGGTGCGCATACGATCGGATTTGCACACTGCGAGCACTTCACGAACCGTCTCTACGACTACAGAGGCACGAAGCAACCGGATCCAGCGATTGACGGGAGGCTGCTGAAGGAGCTTAAAATGTCGTGCCCTAGGTATGGCGGAAATACGGATATAGTGGCGCCGTTCGACGTAACGACGCCGTTTGTGTTCGATCATGCGTATTACGGAAATTTGGAAGGTAAATTGGGACTGTTGGCTACGGATCAAGCTCTGGTTTCGGATGCGAGGATGAAGACGATGGTGCAGAGTTTGGCGAAGGATAAACAGAAGTTTTTTCAAGCTTTCGCGGCGGCGATGGACAAAATGGGGTTCATTGGTGTGAAGAGGGGACGTAGACATGGAGAGCGAAGGACGGATTGTAGCACTCATCAGAGTTAA 1050 51.52 MPVPFSLLCFLTLLLIFHTPLKCAAAPPPPPSPKQALARRHRLLSVDYYNKTCPHLDQLVSSITTQQFRDAPVSAPATLRLFFHDCFVEGCDGSILISTKPGSKVAAEKDAADNKGLRPEGFESIKKAKALVESKCPGVVSCADILAIAARDFVHLAGGPYYQVKKGRWDGKISMASRVGFNLPRANSTVDQLLKLFNSKGLSADDLVVLSGAHTIGFAHCEHFTNRLYDYRGTKQPDPAIDGRLLKELKMSCPRYGGNTDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQALVSDARMKTMVQSLAKDKQKFFQAFAAAMDKMGFIGVKRGRRHGERRTDCSTHQS 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7263913 7266839 - Lsi02G007870.1 Lsi02g00787 655529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00787 349 PRINTS Plant peroxidase signature 77 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Plant peroxidase signature 205 217 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Plant peroxidase signature 265 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Plant peroxidase signature 281 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Plant peroxidase signature 321 334 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Plant peroxidase signature 120 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Plant peroxidase signature 53 72 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Plant peroxidase signature 139 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Plant peroxidase signature 158 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Haem peroxidase superfamily signature 267 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Haem peroxidase superfamily signature 75 89 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Haem peroxidase superfamily signature 140 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PRINTS Haem peroxidase superfamily signature 158 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 PANTHER PEROXIDASE 25-RELATED 34 344 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 ProSiteProfiles Plant heme peroxidase family profile. 43 348 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 SUPERFAMILY Heme-dependent peroxidases 44 346 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 ProSitePatterns Peroxidases active site signature. 75 86 IPR019794 GO:0004601
Lsi02g00787 349 Gene3D Peroxidase, domain 2 184 326 - -
Lsi02g00787 349 Pfam Peroxidase 65 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00787 349 CDD secretory_peroxidase 44 345 IPR033905 GO:0004601|GO:0042744
Lsi02g00787 349 ProSitePatterns Peroxidases proximal heme-ligand signature. 206 216 IPR019793 -
Lsi02g00787 349 Gene3D - 47 345 - -
Lsi02g00787 349 PANTHER PEROXIDASE 19 34 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00787 Lsi-Chr2:7263913 Lsi03g00401 Lsi-Chr3:4590150 3.47E-92 dispersed
Lsi02g00787 Lsi-Chr2:7263913 Lsi04g01357 Lsi-Chr4:21304352 6.23E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00787 K00430 - csv:101216263 645.966