Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00805 ATGATGGGTGAGAGAAAGAATAATAATGAAGATCAATATGAAGGTGGAATCAAGCTGTTTGGGGCAACAATTATGTTGCAAAATAACAGGCAAATCATCAAAGAAGAAGAAGAAGAATTAGAAGAGCCCAATAAATCAGATCAGCAATCACTAGAAAAAAGGCCTGAGAAGATCATTCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAGAGGTATTGGACTGCGGGCGGGGCCCTTCGCAACGTCCCCATCGGAGCCGGCCGTCGCAAAACCAAGCCCCCTTGTCGAACTTTTGCTGGCTTGCCAGAAAATTGTGTCTTTGATTCTTCAGGGATCGTCGCGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGGAGTGGCATGTCGTCGCTGCCACTGCCACACAAGGCGGTTTCCGGCAAATTTTACCGGTAAAGCGGCGGAGAGATTGCCAAGATGGAAGCCAAGAGTCCGGCTTGGCGGACGGGGGAGGAGATGCCATTGTTTCTAGTAAGGTCAACTTCTGCTGTTTGTTTGACGAAGCCTTCACGAGCGATCTCGTCGCAGTCGCTTCTGCTGCTCTTAATGAGAAACACTTCGCAGATATCTTGTTCGTGGTCTCCGTCCACCGGCATCCGATAGGTTCCGGTCTCGTCAGTCGTGGTGTGTGTGCTGTATGTTATGCTTTCTGTTGA 756 48.28 MMGERKNNNEDQYEGGIKLFGATIMLQNNRQIIKEEEEELEEPNKSDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCRTFAGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAATATQGGFRQILPVKRRRDCQDGSQESGLADGGGDAIVSSKVNFCCLFDEAFTSDLVAVASAALNEKHFADILFVVSVHRHPIGSGLVSRGVCAVCYAFC 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7436384 7437845 - Lsi02G008050.1 Lsi02g00805 655547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00805 251 Pfam Dof domain, zinc finger 57 112 IPR003851 GO:0003677|GO:0006355
Lsi02g00805 251 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 13 173 - -
Lsi02g00805 251 PANTHER CYCLIC DOF FACTOR 2 13 173 IPR045174 GO:0003700|GO:0006355
Lsi02g00805 251 ProSitePatterns Zinc finger Dof-type signature. 61 97 IPR003851 GO:0003677|GO:0006355
Lsi02g00805 251 ProSiteProfiles Zinc finger Dof-type profile. 59 113 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00243 Lsi02g00805 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00805 Lsi-Chr2:7436384 Lsi03g01577 Lsi-Chr3:26782293 2.11E-37 dispersed
Lsi01g00243 Lsi-Chr1:2212592 Lsi02g00805 Lsi-Chr2:7436384 3.32E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24786 PF02701 zf-Dof 1.30E-31 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00805 - - csv:101204978 317.005