Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00815 ATGGAGAAAAAGGGTACCATTTTAATGCAAAGGTACGAACTTGGGAGAATGCTTGGACAAGGCACTTTTGCTAAAGTCTACCATGCTCGTAATCTCAAGTCTGGCCAGAGCGTGGCCATTAAAATCATTGACAAAGAGAAAGTACTACGTGTTGGGTTGATAGATCAAATCAAGAGAGAAATCTCTGTTATGCGCCTTGTCCGTCATCCCAATGTGGTGCAGCTTTATGAGGTTATGGCTAGCAGAACCAAAATCTATTTTGCTATGGAGTATGTCAAAGGTGGGGAGCTTTTCAATAAAGTGGCTAAAGGAAAGCTTAAGGAAGATGCTGCTCGTAAGTACTTTCAACAGCTCATTGGTGCTGTTGATTATTGTCATAGCCGTGGTGTGTATCATAGAGATATCAAGCCTGAAAATCTCCTTCTTGATGAGTTTGGGAATCTCAAGATTTCTGATTTTGGATTGAGTGCTTTGGCTGAGTCTAGGAGACAAGATGGGCTTCTTCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGTGCTAAAGCTGATATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTGGCTGGTTATCTCCCTTTCCATGATCCAAATCTAATGGAAATGTACAGAAAAATCTCAAGAGGAGAATTCAGATGCCCTCATTGGTTTCCTCCAGAAGTTAGAAAGCTGCTCTCAAGAATCCTTGACCCAAGTCCTCACACAAGAATAAACATGGCCAAACTAATGGAAAATTCCTGGTTCAAGAAGGGTTTCAAAGCAAATGTAGCAACTCCAAAACAACTTCAAATCGATGACGACATGAGCGACGTTCATTCTGCTTTCGACGACGTTAGTTCGGAAGAAGGAAGCTCTGTTAGTAGCACCAGTGAGAGCGGAAAGCCACCAACAGGGGCCAGAACCCCAATGAGACATAATTCTTTCAATGCATTTGACATCATATCTCTCTCACCAGGTTTTGATCTATCAGGTCTGTTTGAGAGTGATGTGAACGAGAGGCCACGGTCACGTTTCACGACGAAGAAACCAGCGTCGGCGATCGTGTCGAAGTTCGAAGAAATAGCAGAAATGGAAAGGTTCAAAGTGATGAAGAAAGATGGGATTGTGAAACTGCAGGGGAGTAAACAGGGGAGGAAAGGCCAATTGGCTATAGATGCTGAGATATTTGAAGTAACACCTTCTTTTTTTGTGGTTGAAGTGAAGAAAACTGCTGGAGATACATTGGAATATAGGCAATTTTACAACAAAGACATGAGACCTTGCCTTAAGGATATTGTATGGACTTGGGAAGGAAATGAACAGCAGCAGCAGCAGCAACAGCAACAACCACAATCACAAACTGTTTAG 1401 42.54 MEKKGTILMQRYELGRMLGQGTFAKVYHARNLKSGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFNKVAKGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFRCPHWFPPEVRKLLSRILDPSPHTRINMAKLMENSWFKKGFKANVATPKQLQIDDDMSDVHSAFDDVSSEEGSSVSSTSESGKPPTGARTPMRHNSFNAFDIISLSPGFDLSGLFESDVNERPRSRFTTKKPASAIVSKFEEIAEMERFKVMKKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVKKTAGDTLEYRQFYNKDMRPCLKDIVWTWEGNEQQQQQQQQQPQSQTV 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7601919 7604128 + Lsi02G008150.1 Lsi02g00815 655557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00815 466 MobiDBLite consensus disorder prediction 297 322 - -
Lsi02g00815 466 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00815 466 Gene3D Transferase(Phosphotransferase) domain 1 3 315 - -
Lsi02g00815 466 SUPERFAMILY Protein kinase-like (PK-like) 8 319 IPR011009 -
Lsi02g00815 466 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165
Lsi02g00815 466 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lsi02g00815 466 CDD CIPK_C 327 441 - -
Lsi02g00815 466 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00815 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lsi02g00815 466 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 457 - -
Lsi02g00815 466 Gene3D Kinase associated domain 1, KA1 321 446 - -
Lsi02g00815 466 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00815 466 PANTHER - 2 457 - -
Lsi02g00815 466 Pfam NAF domain 324 382 IPR004041 GO:0007165
Lsi02g00815 466 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00815 Lsi-Chr2:7601919 Lsi10g01478 Lsi-Chr10:18893770 0 dispersed
Lsi05g02172 Lsi-Chr5:28393444 Lsi02g00815 Lsi-Chr2:7601919 1.14E-141 dispersed
Lsi03g01264 Lsi-Chr3:23322728 Lsi02g00815 Lsi-Chr2:7601919 3.43E-168 transposed
Lsi04g02076 Lsi-Chr4:27926843 Lsi02g00815 Lsi-Chr2:7601919 2.07E-172 transposed
Lsi06g01165 Lsi-Chr6:21900407 Lsi02g00815 Lsi-Chr2:7601919 0 transposed
Lsi11g00402 Lsi-Chr11:4196553 Lsi02g00815 Lsi-Chr2:7601919 0 transposed
Lsi01g00235 Lsi-Chr1:2149310 Lsi02g00815 Lsi-Chr2:7601919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83385 PF00069 Pkinase 4.50E-72 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00815 K07198 - csv:101206082 833.172